miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16470 3' -59.5 NC_004084.1 + 47113 1.12 0.000267
Target:  5'- gUCGGCACCUGCAUCCGGUGCGACGCCg -3'
miRNA:   3'- -AGCCGUGGACGUAGGCCACGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 55273 0.66 0.534362
Target:  5'- aUCGGCGCuCUGC--UgGGUGuCGAuCGCUu -3'
miRNA:   3'- -AGCCGUG-GACGuaGgCCAC-GCU-GCGG- -5'
16470 3' -59.5 NC_004084.1 + 27528 0.66 0.534362
Target:  5'- aCGGCuACCUGgAUggaCCGGUgGCcGCGCa -3'
miRNA:   3'- aGCCG-UGGACgUA---GGCCA-CGcUGCGg -5'
16470 3' -59.5 NC_004084.1 + 46571 0.66 0.524134
Target:  5'- cUCGGCAUCgGCAUCgCG--GCGAuCGUCg -3'
miRNA:   3'- -AGCCGUGGaCGUAG-GCcaCGCU-GCGG- -5'
16470 3' -59.5 NC_004084.1 + 16886 0.66 0.524134
Target:  5'- gCGGCGUCUGC-UCCGau-CGACGCUg -3'
miRNA:   3'- aGCCGUGGACGuAGGCcacGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 43782 0.66 0.513983
Target:  5'- -gGGCGCUcGCcggcggagaGUCCGGcgGCGaggaGCGCCg -3'
miRNA:   3'- agCCGUGGaCG---------UAGGCCa-CGC----UGCGG- -5'
16470 3' -59.5 NC_004084.1 + 55153 0.66 0.493928
Target:  5'- aCGGCACgaGCGUuggCCGGguucGCGACaGUUa -3'
miRNA:   3'- aGCCGUGgaCGUA---GGCCa---CGCUG-CGG- -5'
16470 3' -59.5 NC_004084.1 + 51463 0.67 0.445467
Target:  5'- gCGGCGgCUGUA--CGG-GCGACGaCCg -3'
miRNA:   3'- aGCCGUgGACGUagGCCaCGCUGC-GG- -5'
16470 3' -59.5 NC_004084.1 + 22458 0.67 0.436095
Target:  5'- gUCGGgACUggucacgGCcgCCGaccccgGCGACGCCg -3'
miRNA:   3'- -AGCCgUGGa------CGuaGGCca----CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 43839 0.68 0.426837
Target:  5'- -gGGCGCgaGaCAUCC---GCGACGCCg -3'
miRNA:   3'- agCCGUGgaC-GUAGGccaCGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 17236 0.7 0.309707
Target:  5'- cUCGGUgaagcagcaggAUCUGCggCCGGUgcagucgGCGAUGCCc -3'
miRNA:   3'- -AGCCG-----------UGGACGuaGGCCA-------CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 29416 0.7 0.288874
Target:  5'- -gGGCuCCUGCAUCgCGGUcaucagGCcGACGUCg -3'
miRNA:   3'- agCCGuGGACGUAG-GCCA------CG-CUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 54658 0.71 0.254934
Target:  5'- aCGGCACCUGUGucagcggguuUCCGGUcGCGAuugacuggcaaacCGCUc -3'
miRNA:   3'- aGCCGUGGACGU----------AGGCCA-CGCU-------------GCGG- -5'
16470 3' -59.5 NC_004084.1 + 34951 0.72 0.231243
Target:  5'- uUCGuGCGCUaGCggCUGGUcGCGACGCUg -3'
miRNA:   3'- -AGC-CGUGGaCGuaGGCCA-CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 18572 0.66 0.493928
Target:  5'- aCGGCGCCgcgGCcgCCGaUGgacuCGAgCGCCa -3'
miRNA:   3'- aGCCGUGGa--CGuaGGCcAC----GCU-GCGG- -5'
16470 3' -59.5 NC_004084.1 + 49513 0.66 0.493928
Target:  5'- uUCGGCuuccGCCUcuuCGUCCGaGU-CGACGCUg -3'
miRNA:   3'- -AGCCG----UGGAc--GUAGGC-CAcGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 54565 0.66 0.493928
Target:  5'- gUUGGaCACCgaGguUCCGGUGgagccgucguCGGCGUCg -3'
miRNA:   3'- -AGCC-GUGGa-CguAGGCCAC----------GCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 40847 0.66 0.503912
Target:  5'- ---cCGCCUGC-UCUGGUGCGucccACGCUc -3'
miRNA:   3'- agccGUGGACGuAGGCCACGC----UGCGG- -5'
16470 3' -59.5 NC_004084.1 + 22942 0.66 0.513983
Target:  5'- cUCGGCgaucgccccucgACCUGC-UCCuGGU-CGAUGUCa -3'
miRNA:   3'- -AGCCG------------UGGACGuAGG-CCAcGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 29989 0.7 0.288874
Target:  5'- cCGGCgucgACCUgGUcgCUGGUGaCGACGUCa -3'
miRNA:   3'- aGCCG----UGGA-CGuaGGCCAC-GCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.