miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16473 3' -55.1 NC_004084.1 + 37976 0.66 0.774859
Target:  5'- -cCGACU--GAGAcGGUUGACGACUg -3'
miRNA:   3'- caGCUGAcgCUCUaCCAGCUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 46194 0.66 0.764827
Target:  5'- --aGGCgGCGAGAucgucgucggaUGcGUCGACGAUCa -3'
miRNA:   3'- cagCUGaCGCUCU-----------AC-CAGCUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 53256 0.66 0.75466
Target:  5'- cGUCGACggcGaCGAGAUcGGgccgggCGACGuCCUg -3'
miRNA:   3'- -CAGCUGa--C-GCUCUA-CCa-----GCUGCuGGA- -5'
16473 3' -55.1 NC_004084.1 + 27059 0.66 0.75466
Target:  5'- uGUCGAUcGCGcGAUGcucgacGUCGACGACg- -3'
miRNA:   3'- -CAGCUGaCGCuCUAC------CAGCUGCUGga -5'
16473 3' -55.1 NC_004084.1 + 47068 0.66 0.73397
Target:  5'- -cUGACUGcCGAGGUGGgagCGAUGuCUa -3'
miRNA:   3'- caGCUGAC-GCUCUACCa--GCUGCuGGa -5'
16473 3' -55.1 NC_004084.1 + 22472 0.66 0.723469
Target:  5'- -aCGGCUGCGuGGUGG-CGGCu-CCa -3'
miRNA:   3'- caGCUGACGCuCUACCaGCUGcuGGa -5'
16473 3' -55.1 NC_004084.1 + 51563 0.66 0.723469
Target:  5'- -cCGGCUG-GAGGuuUGGUCacGAUGACCg -3'
miRNA:   3'- caGCUGACgCUCU--ACCAG--CUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 29634 0.67 0.702209
Target:  5'- uGUCGGCUcCG-GAc-GUCGACGACCg -3'
miRNA:   3'- -CAGCUGAcGCuCUacCAGCUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 33087 0.68 0.648072
Target:  5'- -aCGAgccCUGCGAGAaGGggcgcgaCGGCGGCCUc -3'
miRNA:   3'- caGCU---GACGCUCUaCCa------GCUGCUGGA- -5'
16473 3' -55.1 NC_004084.1 + 27452 0.68 0.615333
Target:  5'- aUCGAUccggaGCGGGAgacGGUCGGCGuCCUc -3'
miRNA:   3'- cAGCUGa----CGCUCUa--CCAGCUGCuGGA- -5'
16473 3' -55.1 NC_004084.1 + 21382 0.69 0.593564
Target:  5'- aUCGACgaccGUGAGgcGG-CGAUGACCg -3'
miRNA:   3'- cAGCUGa---CGCUCuaCCaGCUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 50253 0.69 0.593564
Target:  5'- cGUCG-CUggaGCGGGcUGGUCGgcACGACCa -3'
miRNA:   3'- -CAGCuGA---CGCUCuACCAGC--UGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 49647 0.69 0.582723
Target:  5'- cUCGAgCUGUGGGcgGUGGUCGACauGAUCUc -3'
miRNA:   3'- cAGCU-GACGCUC--UACCAGCUG--CUGGA- -5'
16473 3' -55.1 NC_004084.1 + 47388 0.69 0.571922
Target:  5'- cGUCGACgGCGAGcuccagGGcgCGACGACg- -3'
miRNA:   3'- -CAGCUGaCGCUCua----CCa-GCUGCUGga -5'
16473 3' -55.1 NC_004084.1 + 18019 0.69 0.56117
Target:  5'- cGUCGACgGCGAGugugauGUGGUcCGA-GACCa -3'
miRNA:   3'- -CAGCUGaCGCUC------UACCA-GCUgCUGGa -5'
16473 3' -55.1 NC_004084.1 + 12775 0.7 0.529278
Target:  5'- uGUCGGCaucCGAGAcgccGUCGACGACCg -3'
miRNA:   3'- -CAGCUGac-GCUCUac--CAGCUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 52930 0.7 0.518793
Target:  5'- cGUCGACUGCGAcGAucUGGcCGuCGGCg- -3'
miRNA:   3'- -CAGCUGACGCU-CU--ACCaGCuGCUGga -5'
16473 3' -55.1 NC_004084.1 + 47452 0.72 0.410069
Target:  5'- uUCGACccgGAGAUGGUCGAuguCGACCg -3'
miRNA:   3'- cAGCUGacgCUCUACCAGCU---GCUGGa -5'
16473 3' -55.1 NC_004084.1 + 44216 0.72 0.400896
Target:  5'- cUCGACgaGCG-GAUGGcCGACGGCUg -3'
miRNA:   3'- cAGCUGa-CGCuCUACCaGCUGCUGGa -5'
16473 3' -55.1 NC_004084.1 + 23077 0.72 0.391854
Target:  5'- -gCGACgcgaCGAGGUGGacgUCGGCGACCUc -3'
miRNA:   3'- caGCUGac--GCUCUACC---AGCUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.