miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16473 5' -53.8 NC_004084.1 + 49479 0.66 0.849009
Target:  5'- uGucCUCGGaguCGUCGGcgUCAUCCGGAu -3'
miRNA:   3'- gCucGAGCU---GCAGCUugAGUAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 19601 0.66 0.840428
Target:  5'- aCGAGUUCGugGUCaAGCacgaGUCgGGGa -3'
miRNA:   3'- -GCUCGAGCugCAGcUUGag--UAGgCCU- -5'
16473 5' -53.8 NC_004084.1 + 18221 0.66 0.840428
Target:  5'- -cAGCUCGAgGUgaaCGAGgUCG-CCGGAg -3'
miRNA:   3'- gcUCGAGCUgCA---GCUUgAGUaGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 30409 0.66 0.831631
Target:  5'- gGAGC-CGACGUCGAcggGCggcgaCGGAa -3'
miRNA:   3'- gCUCGaGCUGCAGCU---UGaguagGCCU- -5'
16473 5' -53.8 NC_004084.1 + 36155 0.66 0.831631
Target:  5'- uCGAcuggaUCGACGUCGA---CGUCCGGGu -3'
miRNA:   3'- -GCUcg---AGCUGCAGCUugaGUAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 16947 0.66 0.831631
Target:  5'- gCGGGCgucgCGACGUCGggUcuUCGagcgCCuGGAc -3'
miRNA:   3'- -GCUCGa---GCUGCAGCuuG--AGUa---GG-CCU- -5'
16473 5' -53.8 NC_004084.1 + 16677 0.66 0.831631
Target:  5'- --cGC-CGGCGUCGucccGAUcgUCAUCCGGGa -3'
miRNA:   3'- gcuCGaGCUGCAGC----UUG--AGUAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 26009 0.66 0.83074
Target:  5'- gCGAGCUCGucgacgggaccgaACG-CGGACUCgAUCgagCGGAg -3'
miRNA:   3'- -GCUCGAGC-------------UGCaGCUUGAG-UAG---GCCU- -5'
16473 5' -53.8 NC_004084.1 + 32105 0.66 0.822628
Target:  5'- aCGAGCUCGAgcagcucguCGUCGAGCa---CCaGGAg -3'
miRNA:   3'- -GCUCGAGCU---------GCAGCUUGaguaGG-CCU- -5'
16473 5' -53.8 NC_004084.1 + 45476 0.67 0.804041
Target:  5'- cCGAGCcucguUCGGCGUCGAucaGCgUCuaccuggCCGGGc -3'
miRNA:   3'- -GCUCG-----AGCUGCAGCU---UG-AGua-----GGCCU- -5'
16473 5' -53.8 NC_004084.1 + 53604 0.67 0.797364
Target:  5'- gCGAGCuuugaucUCGACGUUGAcgaacugcuggugguACUCAUCaguggucaGGAa -3'
miRNA:   3'- -GCUCG-------AGCUGCAGCU---------------UGAGUAGg-------CCU- -5'
16473 5' -53.8 NC_004084.1 + 50106 0.67 0.794477
Target:  5'- cCGAGCgcgguacuUCGA-GUCGAGgcccgcgaUCGUCCGGAu -3'
miRNA:   3'- -GCUCG--------AGCUgCAGCUUg-------AGUAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 25385 0.67 0.794477
Target:  5'- cCGAGUcagUCGAgGUCGAGCUgcUCCuGAa -3'
miRNA:   3'- -GCUCG---AGCUgCAGCUUGAguAGGcCU- -5'
16473 5' -53.8 NC_004084.1 + 1511 0.67 0.793511
Target:  5'- uCGAGCUCGAaGcCGAugcACUCgcggucgGUCUGGAc -3'
miRNA:   3'- -GCUCGAGCUgCaGCU---UGAG-------UAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 55767 0.67 0.791574
Target:  5'- aCGAGCUCGAcuggacgaugaacaCGaUCGAGuCcgUGUCCGGAu -3'
miRNA:   3'- -GCUCGAGCU--------------GC-AGCUU-Ga-GUAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 46529 0.67 0.784746
Target:  5'- aCGAuCUCGGCaUCGAAgUCuucgacGUCCGGAu -3'
miRNA:   3'- -GCUcGAGCUGcAGCUUgAG------UAGGCCU- -5'
16473 5' -53.8 NC_004084.1 + 29198 0.67 0.784746
Target:  5'- --uGCUCGGCGUCGAugU--UCCaGAg -3'
miRNA:   3'- gcuCGAGCUGCAGCUugAguAGGcCU- -5'
16473 5' -53.8 NC_004084.1 + 57423 0.67 0.774859
Target:  5'- gCGAGCUCGAgGuggacaacaaccUCGAACUCAgcgacaCCGa- -3'
miRNA:   3'- -GCUCGAGCUgC------------AGCUUGAGUa-----GGCcu -5'
16473 5' -53.8 NC_004084.1 + 52219 0.67 0.774859
Target:  5'- uCGGGCagaucaUCGAUugauUCGAACUCAUCCGc- -3'
miRNA:   3'- -GCUCG------AGCUGc---AGCUUGAGUAGGCcu -5'
16473 5' -53.8 NC_004084.1 + 736 0.67 0.764827
Target:  5'- gGAGCaacucUCGACGUCGGAggCG-CUGGAc -3'
miRNA:   3'- gCUCG-----AGCUGCAGCUUgaGUaGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.