miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16474 3' -56.8 NC_004084.1 + 28899 0.66 0.653785
Target:  5'- cGcGGGUGGCGaagCgGGUgUGCCCGAGAg -3'
miRNA:   3'- aCuCCUGCCGUa--GaCCA-ACGGGCUCU- -5'
16474 3' -56.8 NC_004084.1 + 1719 0.66 0.642903
Target:  5'- gGAGGAUGGCGgcugCUcgaucGGUga-CCGAGAc -3'
miRNA:   3'- aCUCCUGCCGUa---GA-----CCAacgGGCUCU- -5'
16474 3' -56.8 NC_004084.1 + 9037 0.66 0.606975
Target:  5'- aGAGGGCauGGaacucgcUCUGGUUGCCCuucuggaacguucgGAGAu -3'
miRNA:   3'- aCUCCUG--CCgu-----AGACCAACGGG--------------CUCU- -5'
16474 3' -56.8 NC_004084.1 + 8204 0.67 0.585292
Target:  5'- cGcGGAUGGCGUCgaGGUUgaaccaguagugcgGCUCGGGAa -3'
miRNA:   3'- aCuCCUGCCGUAGa-CCAA--------------CGGGCUCU- -5'
16474 3' -56.8 NC_004084.1 + 55618 0.67 0.56698
Target:  5'- --cGGccuCGGCGUCUGGUacacGCUCGAGu -3'
miRNA:   3'- acuCCu--GCCGUAGACCAa---CGGGCUCu -5'
16474 3' -56.8 NC_004084.1 + 45642 0.67 0.56698
Target:  5'- cGucGACGGCGUCUcGGaUGCCgacaacgaCGAGAc -3'
miRNA:   3'- aCucCUGCCGUAGA-CCaACGG--------GCUCU- -5'
16474 3' -56.8 NC_004084.1 + 31751 0.68 0.493527
Target:  5'- cUGAGGGCGGCAUCUc---GCUgGAGu -3'
miRNA:   3'- -ACUCCUGCCGUAGAccaaCGGgCUCu -5'
16474 3' -56.8 NC_004084.1 + 21481 0.69 0.463376
Target:  5'- cGAGGGCGGCgAUCgccucGGUUGCgUCGuAGGc -3'
miRNA:   3'- aCUCCUGCCG-UAGa----CCAACG-GGC-UCU- -5'
16474 3' -56.8 NC_004084.1 + 9854 0.69 0.443821
Target:  5'- cGAGGGCGGC-UCacgcGGgaGCCCGgcGGAa -3'
miRNA:   3'- aCUCCUGCCGuAGa---CCaaCGGGC--UCU- -5'
16474 3' -56.8 NC_004084.1 + 6082 0.7 0.397056
Target:  5'- cGAGGAgGGUGaCUgGGUUGUCCgGAGAa -3'
miRNA:   3'- aCUCCUgCCGUaGA-CCAACGGG-CUCU- -5'
16474 3' -56.8 NC_004084.1 + 12715 0.76 0.164286
Target:  5'- -uGGGGCGGCAucgaUCUGGaUGCCCGAc- -3'
miRNA:   3'- acUCCUGCCGU----AGACCaACGGGCUcu -5'
16474 3' -56.8 NC_004084.1 + 48114 1.09 0.000772
Target:  5'- gUGAGGACGGCAUCUGGUUGCCCGAGAu -3'
miRNA:   3'- -ACUCCUGCCGUAGACCAACGGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.