miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16474 5' -53.6 NC_004084.1 + 52023 0.66 0.866764
Target:  5'- gGCCCUCGAGCAggcugagCGagcGGUCUacGGCGUc -3'
miRNA:   3'- -CGGGAGCUUGUa------GCa--CUAGGc-CUGCG- -5'
16474 5' -53.6 NC_004084.1 + 51517 0.66 0.866764
Target:  5'- aGCUCgUCGAGacgGUCGcGAUCCcGACGUa -3'
miRNA:   3'- -CGGG-AGCUUg--UAGCaCUAGGcCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 52575 0.66 0.866764
Target:  5'- aUCCaCGAggacuGCGgcggCGUGGUCCGGugGg -3'
miRNA:   3'- cGGGaGCU-----UGUa---GCACUAGGCCugCg -5'
16474 5' -53.6 NC_004084.1 + 26256 0.66 0.865967
Target:  5'- cGUCCUCGGcguugauCAUCGUcucgugcGA-CgGGACGCa -3'
miRNA:   3'- -CGGGAGCUu------GUAGCA-------CUaGgCCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 15768 0.66 0.858682
Target:  5'- gGCUCUCGAcgGCGaucUCGaUGcacuugaggaccGUUCGGACGCc -3'
miRNA:   3'- -CGGGAGCU--UGU---AGC-AC------------UAGGCCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 55233 0.66 0.858682
Target:  5'- cGCUCUCGGaaccgacgACAagGUGAUCCuGAucaCGCu -3'
miRNA:   3'- -CGGGAGCU--------UGUagCACUAGGcCU---GCG- -5'
16474 5' -53.6 NC_004084.1 + 54079 0.66 0.850367
Target:  5'- uUCCUCG-GCGUCGgugGAgaacgcUCCGGACu- -3'
miRNA:   3'- cGGGAGCuUGUAGCa--CU------AGGCCUGcg -5'
16474 5' -53.6 NC_004084.1 + 31315 0.66 0.850367
Target:  5'- aGCCCUucUGGAUccggcUCGgGAUCCGGA-GCa -3'
miRNA:   3'- -CGGGA--GCUUGu----AGCaCUAGGCCUgCG- -5'
16474 5' -53.6 NC_004084.1 + 19155 0.66 0.850367
Target:  5'- cGUCCgguacacACAUCGUGAaUgGGACGCu -3'
miRNA:   3'- -CGGGagcu---UGUAGCACUaGgCCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 8407 0.66 0.850367
Target:  5'- cCCgCUCGGcgACAaCGUGAUCaUGGGCGa -3'
miRNA:   3'- cGG-GAGCU--UGUaGCACUAG-GCCUGCg -5'
16474 5' -53.6 NC_004084.1 + 39838 0.66 0.850367
Target:  5'- gGCgCUCGAGucCAUCGgcggCCGcGGCGCc -3'
miRNA:   3'- -CGgGAGCUU--GUAGCacuaGGC-CUGCG- -5'
16474 5' -53.6 NC_004084.1 + 15495 0.66 0.850367
Target:  5'- uGUCCUCGAuaggACAUC-UGAacUCCGcGGCaGCu -3'
miRNA:   3'- -CGGGAGCU----UGUAGcACU--AGGC-CUG-CG- -5'
16474 5' -53.6 NC_004084.1 + 49192 0.66 0.850367
Target:  5'- cGCCCugaUCGAGCAg-GUcAUCCaGGACGg -3'
miRNA:   3'- -CGGG---AGCUUGUagCAcUAGG-CCUGCg -5'
16474 5' -53.6 NC_004084.1 + 56019 0.66 0.850367
Target:  5'- uGCCCUCGAcuCGUCGUcgGAUUCGcuguCGUc -3'
miRNA:   3'- -CGGGAGCUu-GUAGCA--CUAGGCcu--GCG- -5'
16474 5' -53.6 NC_004084.1 + 20948 0.66 0.850367
Target:  5'- uCCCgacCGugucACGUCGgGGUCgGGAUGCg -3'
miRNA:   3'- cGGGa--GCu---UGUAGCaCUAGgCCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 4307 0.66 0.841828
Target:  5'- cGCCggugaucgCGGGCGUCGUcGAgUCCGGAgCGUu -3'
miRNA:   3'- -CGGga------GCUUGUAGCA-CU-AGGCCU-GCG- -5'
16474 5' -53.6 NC_004084.1 + 18111 0.66 0.841828
Target:  5'- uGCCa--GGACAgcgguUCGcGAUCCGGAUGg -3'
miRNA:   3'- -CGGgagCUUGU-----AGCaCUAGGCCUGCg -5'
16474 5' -53.6 NC_004084.1 + 30560 0.66 0.841828
Target:  5'- -gCCUCGAAUcgGUCGUGuuccuucagcucGUCCgugaccucgcGGACGCc -3'
miRNA:   3'- cgGGAGCUUG--UAGCAC------------UAGG----------CCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 35102 0.66 0.841828
Target:  5'- aUCCUCGAACGccucagCGUacaguucuugucGAUCCuGGGCGUc -3'
miRNA:   3'- cGGGAGCUUGUa-----GCA------------CUAGG-CCUGCG- -5'
16474 5' -53.6 NC_004084.1 + 51685 0.66 0.841828
Target:  5'- cCCCUacgGGACGUCGUucccGUaCCGGACGg -3'
miRNA:   3'- cGGGAg--CUUGUAGCAc---UA-GGCCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.