miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16475 5' -56.5 NC_004084.1 + 210 0.66 0.688129
Target:  5'- aGCCCGCAcggCCA--UCGGCG-GggGa -3'
miRNA:   3'- -UGGGCGUcaaGGUguAGCCGCgCuuC- -5'
16475 5' -56.5 NC_004084.1 + 48751 0.66 0.688129
Target:  5'- cACCCuGuCAGggguucagCCAUAUCGggaaGCGCGAGGa -3'
miRNA:   3'- -UGGG-C-GUCaa------GGUGUAGC----CGCGCUUC- -5'
16475 5' -56.5 NC_004084.1 + 1672 0.66 0.677352
Target:  5'- gGCUCGuCGGgcgaCCugAUCGaCGCGAAGg -3'
miRNA:   3'- -UGGGC-GUCaa--GGugUAGCcGCGCUUC- -5'
16475 5' -56.5 NC_004084.1 + 54579 0.66 0.64481
Target:  5'- uUCCGguGgagCCGuCGUCGGCGUcgacGAAGa -3'
miRNA:   3'- uGGGCguCaa-GGU-GUAGCCGCG----CUUC- -5'
16475 5' -56.5 NC_004084.1 + 42288 0.66 0.633927
Target:  5'- -aCCGCGGUcacccgUUCACgAUCGGCGaCGAu- -3'
miRNA:   3'- ugGGCGUCA------AGGUG-UAGCCGC-GCUuc -5'
16475 5' -56.5 NC_004084.1 + 56127 0.67 0.612166
Target:  5'- uGCgCCGCAGUgu--CGUCGGCGuCGAc- -3'
miRNA:   3'- -UG-GGCGUCAagguGUAGCCGC-GCUuc -5'
16475 5' -56.5 NC_004084.1 + 54071 0.67 0.612166
Target:  5'- uUCCGCuGUUCCucgGCGUCGGUG-GAGa -3'
miRNA:   3'- uGGGCGuCAAGG---UGUAGCCGCgCUUc -5'
16475 5' -56.5 NC_004084.1 + 54984 0.67 0.568914
Target:  5'- cCCCGCGacGUaCCGCGauUUGGCGUGAAc -3'
miRNA:   3'- uGGGCGU--CAaGGUGU--AGCCGCGCUUc -5'
16475 5' -56.5 NC_004084.1 + 8303 0.68 0.516027
Target:  5'- uCCCGUugGGcuucgUCCagacgGCGUCGGCGCGGAu -3'
miRNA:   3'- uGGGCG--UCa----AGG-----UGUAGCCGCGCUUc -5'
16475 5' -56.5 NC_004084.1 + 16925 0.7 0.407911
Target:  5'- gGCCgggUGCGGUUCgGCAUCGGCGgGc-- -3'
miRNA:   3'- -UGG---GCGUCAAGgUGUAGCCGCgCuuc -5'
16475 5' -56.5 NC_004084.1 + 9768 0.72 0.33875
Target:  5'- aGCCCGC--UUCCAuCAUCGGCuGCGGc- -3'
miRNA:   3'- -UGGGCGucAAGGU-GUAGCCG-CGCUuc -5'
16475 5' -56.5 NC_004084.1 + 20196 0.72 0.337942
Target:  5'- uUCCGCAGUcgCCGCAUCGaacgacaGCGCGGc- -3'
miRNA:   3'- uGGGCGUCAa-GGUGUAGC-------CGCGCUuc -5'
16475 5' -56.5 NC_004084.1 + 49058 1.07 0.00108
Target:  5'- aACCCGCAGUUCCACAUCGGCGCGAAGc -3'
miRNA:   3'- -UGGGCGUCAAGGUGUAGCCGCGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.