Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16475 | 5' | -56.5 | NC_004084.1 | + | 210 | 0.66 | 0.688129 |
Target: 5'- aGCCCGCAcggCCA--UCGGCG-GggGa -3' miRNA: 3'- -UGGGCGUcaaGGUguAGCCGCgCuuC- -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 1672 | 0.66 | 0.677352 |
Target: 5'- gGCUCGuCGGgcgaCCugAUCGaCGCGAAGg -3' miRNA: 3'- -UGGGC-GUCaa--GGugUAGCcGCGCUUC- -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 8303 | 0.68 | 0.516027 |
Target: 5'- uCCCGUugGGcuucgUCCagacgGCGUCGGCGCGGAu -3' miRNA: 3'- uGGGCG--UCa----AGG-----UGUAGCCGCGCUUc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 9768 | 0.72 | 0.33875 |
Target: 5'- aGCCCGC--UUCCAuCAUCGGCuGCGGc- -3' miRNA: 3'- -UGGGCGucAAGGU-GUAGCCG-CGCUuc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 16925 | 0.7 | 0.407911 |
Target: 5'- gGCCgggUGCGGUUCgGCAUCGGCGgGc-- -3' miRNA: 3'- -UGG---GCGUCAAGgUGUAGCCGCgCuuc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 20196 | 0.72 | 0.337942 |
Target: 5'- uUCCGCAGUcgCCGCAUCGaacgacaGCGCGGc- -3' miRNA: 3'- uGGGCGUCAa-GGUGUAGC-------CGCGCUuc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 42288 | 0.66 | 0.633927 |
Target: 5'- -aCCGCGGUcacccgUUCACgAUCGGCGaCGAu- -3' miRNA: 3'- ugGGCGUCA------AGGUG-UAGCCGC-GCUuc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 48751 | 0.66 | 0.688129 |
Target: 5'- cACCCuGuCAGggguucagCCAUAUCGggaaGCGCGAGGa -3' miRNA: 3'- -UGGG-C-GUCaa------GGUGUAGC----CGCGCUUC- -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 49058 | 1.07 | 0.00108 |
Target: 5'- aACCCGCAGUUCCACAUCGGCGCGAAGc -3' miRNA: 3'- -UGGGCGUCAAGGUGUAGCCGCGCUUC- -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 54071 | 0.67 | 0.612166 |
Target: 5'- uUCCGCuGUUCCucgGCGUCGGUG-GAGa -3' miRNA: 3'- uGGGCGuCAAGG---UGUAGCCGCgCUUc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 54579 | 0.66 | 0.64481 |
Target: 5'- uUCCGguGgagCCGuCGUCGGCGUcgacGAAGa -3' miRNA: 3'- uGGGCguCaa-GGU-GUAGCCGCG----CUUC- -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 54984 | 0.67 | 0.568914 |
Target: 5'- cCCCGCGacGUaCCGCGauUUGGCGUGAAc -3' miRNA: 3'- uGGGCGU--CAaGGUGU--AGCCGCGCUUc -5' |
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16475 | 5' | -56.5 | NC_004084.1 | + | 56127 | 0.67 | 0.612166 |
Target: 5'- uGCgCCGCAGUgu--CGUCGGCGuCGAc- -3' miRNA: 3'- -UG-GGCGUCAagguGUAGCCGC-GCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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