miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16476 3' -60.3 NC_004084.1 + 746 0.66 0.493944
Target:  5'- uCGACG--UCgGAGGCGCUGGAC-CaCCa -3'
miRNA:   3'- -GCUGCugGGgCUCUGCGACCUGcG-GG- -5'
16476 3' -60.3 NC_004084.1 + 41779 0.66 0.493944
Target:  5'- gGACGACgUCGAcGACGa-GGGCGUCa -3'
miRNA:   3'- gCUGCUGgGGCU-CUGCgaCCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 55971 0.66 0.484231
Target:  5'- aCGGCGACgCgGAGGgGCUGauCGCCg -3'
miRNA:   3'- -GCUGCUGgGgCUCUgCGACcuGCGGg -5'
16476 3' -60.3 NC_004084.1 + 21822 0.66 0.484231
Target:  5'- gCGuCGACggUGAGGCGCUGGACGaUgCa -3'
miRNA:   3'- -GCuGCUGggGCUCUGCGACCUGC-GgG- -5'
16476 3' -60.3 NC_004084.1 + 3476 0.66 0.484231
Target:  5'- --cCGcAUCCCGAGGCGgaGGAU-CCCg -3'
miRNA:   3'- gcuGC-UGGGGCUCUGCgaCCUGcGGG- -5'
16476 3' -60.3 NC_004084.1 + 52114 0.66 0.484231
Target:  5'- uCGACGucggagauCUCCGAuGugGCaccguuacGGAUGCCCg -3'
miRNA:   3'- -GCUGCu-------GGGGCU-CugCGa-------CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 50796 0.66 0.483265
Target:  5'- aGACGAaCCCGGGAaucguccuggaccCGUUcgcGGGCGCCg -3'
miRNA:   3'- gCUGCUgGGGCUCU-------------GCGA---CCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 4923 0.67 0.474611
Target:  5'- aCGACGACUucgCCGucGACGUacUGGAugaCGUCCg -3'
miRNA:   3'- -GCUGCUGG---GGCu-CUGCG--ACCU---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 16613 0.67 0.474611
Target:  5'- cCGGCGGgcuCCUCGAGGuCGaucGuGACGCCCu -3'
miRNA:   3'- -GCUGCU---GGGGCUCU-GCga-C-CUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 36459 0.67 0.474611
Target:  5'- uGuCGAUCUCggcgGAGACGUcguccUGGACGCCg -3'
miRNA:   3'- gCuGCUGGGG----CUCUGCG-----ACCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 41752 0.67 0.474611
Target:  5'- gGACGACgCCGGcGACGa-GGACcuCCCg -3'
miRNA:   3'- gCUGCUGgGGCU-CUGCgaCCUGc-GGG- -5'
16476 3' -60.3 NC_004084.1 + 50939 0.67 0.473654
Target:  5'- uCGACGACCCUGAucuccuccucGACGa-GGACgaaacgaGCCUg -3'
miRNA:   3'- -GCUGCUGGGGCU----------CUGCgaCCUG-------CGGG- -5'
16476 3' -60.3 NC_004084.1 + 30320 0.67 0.46414
Target:  5'- aGGCGcACCCCGAaccguugaccgucGGCGa-GGugGCCg -3'
miRNA:   3'- gCUGC-UGGGGCU-------------CUGCgaCCugCGGg -5'
16476 3' -60.3 NC_004084.1 + 47000 0.67 0.455663
Target:  5'- aGACGACCgCGAGuuccuCGa-GGACGUCg -3'
miRNA:   3'- gCUGCUGGgGCUCu----GCgaCCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 52242 0.67 0.446344
Target:  5'- aGACGAgCUCGAGguccAC-CUGGA-GCCCg -3'
miRNA:   3'- gCUGCUgGGGCUC----UGcGACCUgCGGG- -5'
16476 3' -60.3 NC_004084.1 + 9682 0.67 0.446344
Target:  5'- -uACGAUCCCGAgGAUGa-GGugGUCCu -3'
miRNA:   3'- gcUGCUGGGGCU-CUGCgaCCugCGGG- -5'
16476 3' -60.3 NC_004084.1 + 22592 0.67 0.446344
Target:  5'- aCGACGucGCCgaCGAGACGgUGGugaGCUCa -3'
miRNA:   3'- -GCUGC--UGGg-GCUCUGCgACCug-CGGG- -5'
16476 3' -60.3 NC_004084.1 + 40063 0.67 0.443568
Target:  5'- cCGuCGACCCCGcGaACGUcGGgauggucgaauccaACGCCCa -3'
miRNA:   3'- -GCuGCUGGGGCuC-UGCGaCC--------------UGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 37390 0.67 0.437131
Target:  5'- uCGACGaACUCgGcAGACGCuggccgaugaUGGACGCUUg -3'
miRNA:   3'- -GCUGC-UGGGgC-UCUGCG----------ACCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 41902 0.67 0.437131
Target:  5'- aCGACGACCgCGGcGCGCgau-CGCCUg -3'
miRNA:   3'- -GCUGCUGGgGCUcUGCGaccuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.