miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16476 5' -55.1 NC_004084.1 + 35139 0.66 0.746113
Target:  5'- uGGG-CGUCgAGGuccuCGGGGUaCAUCCc -3'
miRNA:   3'- gUCCaGUAGgUCCu---GCCCUAgGUAGG- -5'
16476 5' -55.1 NC_004084.1 + 19931 0.66 0.746113
Target:  5'- -----gAUCgAGGGCGaGGAUCCGUUCa -3'
miRNA:   3'- guccagUAGgUCCUGC-CCUAGGUAGG- -5'
16476 5' -55.1 NC_004084.1 + 16704 0.66 0.746113
Target:  5'- -uGGUCgcgaucGUCCAGGAacucauCGGGAUCCu--- -3'
miRNA:   3'- guCCAG------UAGGUCCU------GCCCUAGGuagg -5'
16476 5' -55.1 NC_004084.1 + 23349 0.66 0.735738
Target:  5'- uCAGcGUCuUCCGGGuCGacgucgacguucGGAUCCGUCg -3'
miRNA:   3'- -GUC-CAGuAGGUCCuGC------------CCUAGGUAGg -5'
16476 5' -55.1 NC_004084.1 + 19942 0.66 0.72526
Target:  5'- cCAGcUCGUCCAGGuuGGGuagagCCggCCg -3'
miRNA:   3'- -GUCcAGUAGGUCCugCCCua---GGuaGG- -5'
16476 5' -55.1 NC_004084.1 + 10731 0.67 0.714691
Target:  5'- gGGGUCGguuUCCGGuugGGGAUCCGgcucgCCa -3'
miRNA:   3'- gUCCAGU---AGGUCcugCCCUAGGUa----GG- -5'
16476 5' -55.1 NC_004084.1 + 7350 0.67 0.711504
Target:  5'- -cGGUCGUCCcaggAGGcgcgguucgcuccgACGGuGAUCCcgCCu -3'
miRNA:   3'- guCCAGUAGG----UCC--------------UGCC-CUAGGuaGG- -5'
16476 5' -55.1 NC_004084.1 + 51036 0.67 0.682548
Target:  5'- gAGGagGUCgCAGG-CGGGAUcaCCGUCg -3'
miRNA:   3'- gUCCagUAG-GUCCuGCCCUA--GGUAGg -5'
16476 5' -55.1 NC_004084.1 + 9242 0.67 0.682548
Target:  5'- uCAGGgCGUCCAGcGucuCGGGGUCguCGUUCg -3'
miRNA:   3'- -GUCCaGUAGGUC-Cu--GCCCUAG--GUAGG- -5'
16476 5' -55.1 NC_004084.1 + 36694 0.67 0.671725
Target:  5'- uGGGUCcucgUCGGGAaGGGAcucucgaaacUCCGUCCc -3'
miRNA:   3'- gUCCAGua--GGUCCUgCCCU----------AGGUAGG- -5'
16476 5' -55.1 NC_004084.1 + 55608 0.68 0.649979
Target:  5'- gAGGUCGuagugaucgaUCCAGaucuucGGCGGG-UCCGUCUc -3'
miRNA:   3'- gUCCAGU----------AGGUC------CUGCCCuAGGUAGG- -5'
16476 5' -55.1 NC_004084.1 + 13279 0.69 0.584662
Target:  5'- --aGUCGUUCGGGuuGGGAUCC-UCUg -3'
miRNA:   3'- gucCAGUAGGUCCugCCCUAGGuAGG- -5'
16476 5' -55.1 NC_004084.1 + 17447 0.73 0.340445
Target:  5'- uCGGGuUCGUCCGGGAucgucgaCGGGAUCaacucguucgcgaCGUCCg -3'
miRNA:   3'- -GUCC-AGUAGGUCCU-------GCCCUAG-------------GUAGG- -5'
16476 5' -55.1 NC_004084.1 + 55459 0.75 0.281255
Target:  5'- cCAGaugaUCcgCCAGGGCcGGAUCCAUCCc -3'
miRNA:   3'- -GUCc---AGuaGGUCCUGcCCUAGGUAGG- -5'
16476 5' -55.1 NC_004084.1 + 35708 0.76 0.229337
Target:  5'- uCGGGUCGcucgCCGGGAC--GAUCCAUCCa -3'
miRNA:   3'- -GUCCAGUa---GGUCCUGccCUAGGUAGG- -5'
16476 5' -55.1 NC_004084.1 + 49204 1.12 0.000734
Target:  5'- gCAGGUCAUCCAGGACGGGAUCCAUCCa -3'
miRNA:   3'- -GUCCAGUAGGUCCUGCCCUAGGUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.