Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16478 | 3' | -59.4 | NC_004084.1 | + | 49810 | 1.06 | 0.000747 |
Target: 5'- uCGGCCUCGAGGACAGCCUCGACGAGUu -3' miRNA: 3'- -GCCGGAGCUCCUGUCGGAGCUGCUCA- -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 58278 | 0.78 | 0.093351 |
Target: 5'- uGGCCUCGGGGugGGCCUCuuCGuGa -3' miRNA: 3'- gCCGGAGCUCCugUCGGAGcuGCuCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 28934 | 0.77 | 0.107037 |
Target: 5'- uCGGCCUCGGGagcgcgucGACAGCgUCGAUGGGc -3' miRNA: 3'- -GCCGGAGCUC--------CUGUCGgAGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 5015 | 0.76 | 0.122591 |
Target: 5'- aGGuCCUCGAGGAguuggUAGCCgccCGACGAGg -3' miRNA: 3'- gCC-GGAGCUCCU-----GUCGGa--GCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 8976 | 0.75 | 0.155968 |
Target: 5'- aCGGCgggaCGAGGGCAGCUacgaguUCGACGAGg -3' miRNA: 3'- -GCCGga--GCUCCUGUCGG------AGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 37408 | 0.74 | 0.168811 |
Target: 5'- aCGcGCCUCGAGGAUGGCCUgCG-CGAu- -3' miRNA: 3'- -GC-CGGAGCUCCUGUCGGA-GCuGCUca -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 57631 | 0.72 | 0.218662 |
Target: 5'- -cGUCUCGAGGucGCGcgucGCCUCGACGAGc -3' miRNA: 3'- gcCGGAGCUCC--UGU----CGGAGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 10476 | 0.72 | 0.241898 |
Target: 5'- aCGGCCU-GAcGGACGGCCUCGAgCGu-- -3' miRNA: 3'- -GCCGGAgCU-CCUGUCGGAGCU-GCuca -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 37097 | 0.72 | 0.248019 |
Target: 5'- cCGaCCUCGAGGuCuGCCUCGAUGAc- -3' miRNA: 3'- -GCcGGAGCUCCuGuCGGAGCUGCUca -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 28097 | 0.71 | 0.280563 |
Target: 5'- aCGGUCaacgguUCGGGGuGC-GCCUCGACGAGc -3' miRNA: 3'- -GCCGG------AGCUCC-UGuCGGAGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 39784 | 0.7 | 0.301669 |
Target: 5'- aCGGCgaCGAGGuCGGCCaacUCGGCGAc- -3' miRNA: 3'- -GCCGgaGCUCCuGUCGG---AGCUGCUca -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 2819 | 0.7 | 0.308972 |
Target: 5'- aGGCCgagaaCGAGGaACAGCacgUUGGCGAGg -3' miRNA: 3'- gCCGGa----GCUCC-UGUCGg--AGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 21395 | 0.7 | 0.323979 |
Target: 5'- aGGCggCGAuGAcCGGCCUCGAUGAGg -3' miRNA: 3'- gCCGgaGCUcCU-GUCGGAGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 7711 | 0.7 | 0.330907 |
Target: 5'- gCGGaaguaccCCUCGAGGACGuccuucGCCUCGcugGCGAGc -3' miRNA: 3'- -GCC-------GGAGCUCCUGU------CGGAGC---UGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 18306 | 0.7 | 0.331683 |
Target: 5'- uCGGCCUCGuAGGACucgaAGCCgcuggCGugGGcGUu -3' miRNA: 3'- -GCCGGAGC-UCCUG----UCGGa----GCugCU-CA- -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 5734 | 0.69 | 0.339522 |
Target: 5'- aGGuCCUCGAucgGGAUgaucGCCUCGACGAc- -3' miRNA: 3'- gCC-GGAGCU---CCUGu---CGGAGCUGCUca -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 38455 | 0.69 | 0.347494 |
Target: 5'- gCGGCCUCGAGGAUcgcgAGaCCgUGAuCGGGg -3' miRNA: 3'- -GCCGGAGCUCCUG----UC-GGaGCU-GCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 57295 | 0.69 | 0.347494 |
Target: 5'- cCGcGCCaUCcAGGACcuCCUCGACGAGg -3' miRNA: 3'- -GC-CGG-AGcUCCUGucGGAGCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 8147 | 0.69 | 0.347494 |
Target: 5'- uCGGCagacgUCGAGGACcucGCCgccaacggCGACGAGg -3' miRNA: 3'- -GCCGg----AGCUCCUGu--CGGa-------GCUGCUCa -5' |
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16478 | 3' | -59.4 | NC_004084.1 | + | 50927 | 0.69 | 0.352341 |
Target: 5'- uCGGCCUCGAcgucGACGacccugaucuccuCCUCGACGAGg -3' miRNA: 3'- -GCCGGAGCUc---CUGUc------------GGAGCUGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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