miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16478 3' -59.4 NC_004084.1 + 43739 0.67 0.492088
Target:  5'- gGGCCaaUCGAGGACccGGCCggGACGc-- -3'
miRNA:   3'- gCCGG--AGCUCCUG--UCGGagCUGCuca -5'
16478 3' -59.4 NC_004084.1 + 51421 0.68 0.398085
Target:  5'- aGGCCuUCGAGGGCGacacGCUgaucuacgUUGGCGAGg -3'
miRNA:   3'- gCCGG-AGCUCCUGU----CGG--------AGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 16413 0.68 0.398085
Target:  5'- aCGGCCacUCGAGcaaaGACGGCgUCGAUGuGg -3'
miRNA:   3'- -GCCGG--AGCUC----CUGUCGgAGCUGCuCa -5'
16478 3' -59.4 NC_004084.1 + 56992 0.68 0.406964
Target:  5'- gCGGCC--GAGGACGGCgaCGcCGAGa -3'
miRNA:   3'- -GCCGGagCUCCUGUCGgaGCuGCUCa -5'
16478 3' -59.4 NC_004084.1 + 54035 0.67 0.439933
Target:  5'- -cGCCUucgaCGAGGACGGCUacgguuggacgcgCGACGAGg -3'
miRNA:   3'- gcCGGA----GCUCCUGUCGGa------------GCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 28273 0.67 0.453158
Target:  5'- gCGGCUUCGAcucguGGACgggAGUCUCGcgaucggggcgGCGAGUa -3'
miRNA:   3'- -GCCGGAGCU-----CCUG---UCGGAGC-----------UGCUCA- -5'
16478 3' -59.4 NC_004084.1 + 16045 0.67 0.462737
Target:  5'- -uGUC-CGAGGAC-GCaCUCGAUGAGUg -3'
miRNA:   3'- gcCGGaGCUCCUGuCG-GAGCUGCUCA- -5'
16478 3' -59.4 NC_004084.1 + 15733 0.67 0.482206
Target:  5'- uCGGUgaUCGcuGGCAGCCUCGcgcCGAGUa -3'
miRNA:   3'- -GCCGg-AGCucCUGUCGGAGCu--GCUCA- -5'
16478 3' -59.4 NC_004084.1 + 44190 0.67 0.482206
Target:  5'- cCGGCCaguaugucucggUUGAGGA---CCUCGACGAGc -3'
miRNA:   3'- -GCCGG------------AGCUCCUgucGGAGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 54497 0.68 0.38933
Target:  5'- cCGG-UUCGAGGAC-GCCuUCGACGAc- -3'
miRNA:   3'- -GCCgGAGCUCCUGuCGG-AGCUGCUca -5'
16478 3' -59.4 NC_004084.1 + 45521 0.69 0.363836
Target:  5'- uCGGCCacucCGAGGAC-GCCggGAUGGGUu -3'
miRNA:   3'- -GCCGGa---GCUCCUGuCGGagCUGCUCA- -5'
16478 3' -59.4 NC_004084.1 + 50927 0.69 0.352341
Target:  5'- uCGGCCUCGAcgucGACGacccugaucuccuCCUCGACGAGg -3'
miRNA:   3'- -GCCGGAGCUc---CUGUc------------GGAGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 28934 0.77 0.107037
Target:  5'- uCGGCCUCGGGagcgcgucGACAGCgUCGAUGGGc -3'
miRNA:   3'- -GCCGGAGCUC--------CUGUCGgAGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 8976 0.75 0.155968
Target:  5'- aCGGCgggaCGAGGGCAGCUacgaguUCGACGAGg -3'
miRNA:   3'- -GCCGga--GCUCCUGUCGG------AGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 10476 0.72 0.241898
Target:  5'- aCGGCCU-GAcGGACGGCCUCGAgCGu-- -3'
miRNA:   3'- -GCCGGAgCU-CCUGUCGGAGCU-GCuca -5'
16478 3' -59.4 NC_004084.1 + 28097 0.71 0.280563
Target:  5'- aCGGUCaacgguUCGGGGuGC-GCCUCGACGAGc -3'
miRNA:   3'- -GCCGG------AGCUCC-UGuCGGAGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 39784 0.7 0.301669
Target:  5'- aCGGCgaCGAGGuCGGCCaacUCGGCGAc- -3'
miRNA:   3'- -GCCGgaGCUCCuGUCGG---AGCUGCUca -5'
16478 3' -59.4 NC_004084.1 + 21395 0.7 0.323979
Target:  5'- aGGCggCGAuGAcCGGCCUCGAUGAGg -3'
miRNA:   3'- gCCGgaGCUcCU-GUCGGAGCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 8147 0.69 0.347494
Target:  5'- uCGGCagacgUCGAGGACcucGCCgccaacggCGACGAGg -3'
miRNA:   3'- -GCCGg----AGCUCCUGu--CGGa-------GCUGCUCa -5'
16478 3' -59.4 NC_004084.1 + 57295 0.69 0.347494
Target:  5'- cCGcGCCaUCcAGGACcuCCUCGACGAGg -3'
miRNA:   3'- -GC-CGG-AGcUCCUGucGGAGCUGCUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.