miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16478 5' -55.6 NC_004084.1 + 26012 0.66 0.745141
Target:  5'- -aGCUCGUCGACGggaccgaacgcggacUCGauCGAGCG-GAg -3'
miRNA:   3'- agUGAGCAGCUGC---------------AGC--GCUCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 54150 0.66 0.741008
Target:  5'- aCGC-CGUUcGCGUCGaaGGGCGAGAa -3'
miRNA:   3'- aGUGaGCAGcUGCAGCg-CUCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 47893 0.66 0.741008
Target:  5'- -gGCUCGgcaacgCGACgGUCGCuccGCGAGGUg -3'
miRNA:   3'- agUGAGCa-----GCUG-CAGCGcu-CGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 37901 0.66 0.741008
Target:  5'- gUCACcucggucucuUCGUCGAucugauguCGUCGUcGGCGGGAUc -3'
miRNA:   3'- -AGUG----------AGCAGCU--------GCAGCGcUCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 35454 0.66 0.730603
Target:  5'- -gACUCgGUCGGCcucGUCGCGAGUGucGUg -3'
miRNA:   3'- agUGAG-CAGCUG---CAGCGCUCGCucUA- -5'
16478 5' -55.6 NC_004084.1 + 52955 0.66 0.720102
Target:  5'- -gGCgUCGUCGugauCGUCGCGAGUGcgcuGGUc -3'
miRNA:   3'- agUG-AGCAGCu---GCAGCGCUCGCu---CUA- -5'
16478 5' -55.6 NC_004084.1 + 22171 0.66 0.720102
Target:  5'- gCACUCGagGACGUCGacccgguaGGCGAGu- -3'
miRNA:   3'- aGUGAGCagCUGCAGCgc------UCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 20120 0.66 0.720102
Target:  5'- aCGCUCGUCGACGgaaCGUcGGUcGGAUu -3'
miRNA:   3'- aGUGAGCAGCUGCa--GCGcUCGcUCUA- -5'
16478 5' -55.6 NC_004084.1 + 13755 0.66 0.709515
Target:  5'- -gGCUCGcccUCGAgGUCGCGcugGGCGGGc- -3'
miRNA:   3'- agUGAGC---AGCUgCAGCGC---UCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 15337 0.67 0.688129
Target:  5'- aCACUCGaCGACGUUgaggagaaagGCG-GUGAGAc -3'
miRNA:   3'- aGUGAGCaGCUGCAG----------CGCuCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 54221 0.67 0.677352
Target:  5'- -gGCUCGagucggaucUCGACGUCG-GAGCGAu-- -3'
miRNA:   3'- agUGAGC---------AGCUGCAGCgCUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 9127 0.67 0.677352
Target:  5'- -gACUCGaUCGGCGUCcGuCGGGCG-GAa -3'
miRNA:   3'- agUGAGC-AGCUGCAG-C-GCUCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 49351 0.67 0.660026
Target:  5'- gUCGaggugaUCGUCGACGUCGCccGAcucuacccgcucgauGCGGGAUu -3'
miRNA:   3'- -AGUg-----AGCAGCUGCAGCG--CU---------------CGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 44944 0.67 0.654596
Target:  5'- aCGUUCGUCGAcgagaacggcguuCGUCGCGAGUG-GAc -3'
miRNA:   3'- aGUGAGCAGCU-------------GCAGCGCUCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 50242 0.67 0.64481
Target:  5'- cCACUCugaGGCGUCGCugGAGCGGGc- -3'
miRNA:   3'- aGUGAGcagCUGCAGCG--CUCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 47013 0.67 0.64481
Target:  5'- uUC-CUCGagGACGUCGCGAuCGAuGAc -3'
miRNA:   3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5'
16478 5' -55.6 NC_004084.1 + 17547 0.67 0.633927
Target:  5'- gUCACgagCGUCGACGacaGCGgAGCGuGGg -3'
miRNA:   3'- -AGUGa--GCAGCUGCag-CGC-UCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 15022 0.67 0.633927
Target:  5'- -gGCUCGUCGAgCGUCGaCGGccacuCGAGGUg -3'
miRNA:   3'- agUGAGCAGCU-GCAGC-GCUc----GCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 18900 0.67 0.633927
Target:  5'- aUC-CUCGagGACGUCGCGAaCGAuGAc -3'
miRNA:   3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5'
16478 5' -55.6 NC_004084.1 + 16640 0.67 0.633927
Target:  5'- aCGCccucgUCGUCGACGUCGUccGgGAGGUc -3'
miRNA:   3'- aGUG-----AGCAGCUGCAGCGcuCgCUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.