Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 26012 | 0.66 | 0.745141 |
Target: 5'- -aGCUCGUCGACGggaccgaacgcggacUCGauCGAGCG-GAg -3' miRNA: 3'- agUGAGCAGCUGC---------------AGC--GCUCGCuCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 54150 | 0.66 | 0.741008 |
Target: 5'- aCGC-CGUUcGCGUCGaaGGGCGAGAa -3' miRNA: 3'- aGUGaGCAGcUGCAGCg-CUCGCUCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 20120 | 0.66 | 0.720102 |
Target: 5'- aCGCUCGUCGACGgaaCGUcGGUcGGAUu -3' miRNA: 3'- aGUGAGCAGCUGCa--GCGcUCGcUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 22171 | 0.66 | 0.720102 |
Target: 5'- gCACUCGagGACGUCGacccgguaGGCGAGu- -3' miRNA: 3'- aGUGAGCagCUGCAGCgc------UCGCUCua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 47893 | 0.66 | 0.741008 |
Target: 5'- -gGCUCGgcaacgCGACgGUCGCuccGCGAGGUg -3' miRNA: 3'- agUGAGCa-----GCUG-CAGCGcu-CGCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 37901 | 0.66 | 0.741008 |
Target: 5'- gUCACcucggucucuUCGUCGAucugauguCGUCGUcGGCGGGAUc -3' miRNA: 3'- -AGUG----------AGCAGCU--------GCAGCGcUCGCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 35454 | 0.66 | 0.730603 |
Target: 5'- -gACUCgGUCGGCcucGUCGCGAGUGucGUg -3' miRNA: 3'- agUGAG-CAGCUG---CAGCGCUCGCucUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 52955 | 0.66 | 0.720102 |
Target: 5'- -gGCgUCGUCGugauCGUCGCGAGUGcgcuGGUc -3' miRNA: 3'- agUG-AGCAGCu---GCAGCGCUCGCu---CUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 13755 | 0.66 | 0.709515 |
Target: 5'- -gGCUCGcccUCGAgGUCGCGcugGGCGGGc- -3' miRNA: 3'- agUGAGC---AGCUgCAGCGC---UCGCUCua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 54221 | 0.67 | 0.677352 |
Target: 5'- -gGCUCGagucggaucUCGACGUCG-GAGCGAu-- -3' miRNA: 3'- agUGAGC---------AGCUGCAGCgCUCGCUcua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 15337 | 0.67 | 0.688129 |
Target: 5'- aCACUCGaCGACGUUgaggagaaagGCG-GUGAGAc -3' miRNA: 3'- aGUGAGCaGCUGCAG----------CGCuCGCUCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 9127 | 0.67 | 0.677352 |
Target: 5'- -gACUCGaUCGGCGUCcGuCGGGCG-GAa -3' miRNA: 3'- agUGAGC-AGCUGCAG-C-GCUCGCuCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 44944 | 0.67 | 0.654596 |
Target: 5'- aCGUUCGUCGAcgagaacggcguuCGUCGCGAGUG-GAc -3' miRNA: 3'- aGUGAGCAGCU-------------GCAGCGCUCGCuCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 50242 | 0.67 | 0.64481 |
Target: 5'- cCACUCugaGGCGUCGCugGAGCGGGc- -3' miRNA: 3'- aGUGAGcagCUGCAGCG--CUCGCUCua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 47013 | 0.67 | 0.64481 |
Target: 5'- uUC-CUCGagGACGUCGCGAuCGAuGAc -3' miRNA: 3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 17547 | 0.67 | 0.633927 |
Target: 5'- gUCACgagCGUCGACGacaGCGgAGCGuGGg -3' miRNA: 3'- -AGUGa--GCAGCUGCag-CGC-UCGCuCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 15022 | 0.67 | 0.633927 |
Target: 5'- -gGCUCGUCGAgCGUCGaCGGccacuCGAGGUg -3' miRNA: 3'- agUGAGCAGCU-GCAGC-GCUc----GCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 18900 | 0.67 | 0.633927 |
Target: 5'- aUC-CUCGagGACGUCGCGAaCGAuGAc -3' miRNA: 3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 49351 | 0.67 | 0.660026 |
Target: 5'- gUCGaggugaUCGUCGACGUCGCccGAcucuacccgcucgauGCGGGAUu -3' miRNA: 3'- -AGUg-----AGCAGCUGCAGCG--CU---------------CGCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 16640 | 0.67 | 0.633927 |
Target: 5'- aCGCccucgUCGUCGACGUCGUccGgGAGGUc -3' miRNA: 3'- aGUG-----AGCAGCUGCAGCGcuCgCUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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