miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16478 5' -55.6 NC_004084.1 + 41250 0.68 0.623043
Target:  5'- cUCcCUCGccuUCGACGUCGCcGGCGAu-- -3'
miRNA:   3'- -AGuGAGC---AGCUGCAGCGcUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 47569 0.68 0.623043
Target:  5'- aCGCcguUCGagGACGuUCGCGAGCGcGGUg -3'
miRNA:   3'- aGUG---AGCagCUGC-AGCGCUCGCuCUA- -5'
16478 5' -55.6 NC_004084.1 + 50253 0.68 0.601306
Target:  5'- gUC-CUCGUCGcCGUUgGCG-GCGAGGUc -3'
miRNA:   3'- -AGuGAGCAGCuGCAG-CGCuCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 683 0.68 0.579672
Target:  5'- -gGCuUCGUCGACGUCcuCGAGCGGu-- -3'
miRNA:   3'- agUG-AGCAGCUGCAGc-GCUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 56111 0.69 0.573212
Target:  5'- gUC-CUCGUCGACGUCGUGcgccgcagugucgucGGCGucGAc -3'
miRNA:   3'- -AGuGAGCAGCUGCAGCGC---------------UCGCu-CUa -5'
16478 5' -55.6 NC_004084.1 + 35418 0.69 0.568914
Target:  5'- gUCAUcgUCGUCGAUcUCGCucGCGAGGUc -3'
miRNA:   3'- -AGUG--AGCAGCUGcAGCGcuCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 870 0.69 0.558207
Target:  5'- gUCAgUCGUCGACGUCGCc-GUcGGAa -3'
miRNA:   3'- -AGUgAGCAGCUGCAGCGcuCGcUCUa -5'
16478 5' -55.6 NC_004084.1 + 19921 0.69 0.547558
Target:  5'- -uGCUCG-CGACGaUCGaGGGCGAGGa -3'
miRNA:   3'- agUGAGCaGCUGC-AGCgCUCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 31628 0.69 0.526461
Target:  5'- uUCGCUCuGggagagCGACGUUGCGuGgGGGAUg -3'
miRNA:   3'- -AGUGAG-Ca-----GCUGCAGCGCuCgCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 17164 0.69 0.516027
Target:  5'- aUCGC-CGgCGACGUCGaaGGCGAGGg -3'
miRNA:   3'- -AGUGaGCaGCUGCAGCgcUCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 48976 0.69 0.516027
Target:  5'- gUCGucUUCGUCGACGUCGCGGcccaucGCGcGGUc -3'
miRNA:   3'- -AGU--GAGCAGCUGCAGCGCU------CGCuCUA- -5'
16478 5' -55.6 NC_004084.1 + 4832 0.7 0.495418
Target:  5'- -aGCUCGcCGAuCGUCGCGAGCa---- -3'
miRNA:   3'- agUGAGCaGCU-GCAGCGCUCGcucua -5'
16478 5' -55.6 NC_004084.1 + 35348 0.7 0.475189
Target:  5'- cCAcCUCGUCG-CGUCGCcGGCGAcGAUc -3'
miRNA:   3'- aGU-GAGCAGCuGCAGCGcUCGCU-CUA- -5'
16478 5' -55.6 NC_004084.1 + 11713 0.71 0.407911
Target:  5'- cCACUCGUCgcgguaGACGUCGCcGGCGAc-- -3'
miRNA:   3'- aGUGAGCAG------CUGCAGCGcUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 9537 0.72 0.389808
Target:  5'- cUCGC-CGUCGugcauCGUCGCGAGCcccGGGAc -3'
miRNA:   3'- -AGUGaGCAGCu----GCAGCGCUCG---CUCUa -5'
16478 5' -55.6 NC_004084.1 + 57394 0.72 0.380956
Target:  5'- gCGCgcccccgaucgCGUCGACGUCGCcGGCGAGc- -3'
miRNA:   3'- aGUGa----------GCAGCUGCAGCGcUCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 3082 0.73 0.330728
Target:  5'- cCGCUCGUCGACGU-GCGuuccGGCGGGc- -3'
miRNA:   3'- aGUGAGCAGCUGCAgCGC----UCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 29219 0.73 0.315104
Target:  5'- -aGCgCGUCGACGuuguUCGCGGGCGAGu- -3'
miRNA:   3'- agUGaGCAGCUGC----AGCGCUCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 11915 0.75 0.245381
Target:  5'- aUCaACUCGgcgaccggCGACGUCGCGAccaGCGAGGa -3'
miRNA:   3'- -AG-UGAGCa-------GCUGCAGCGCU---CGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 42012 0.76 0.210016
Target:  5'- uUUGCUCGagUGGcCGUCGCGAGCGAGGc -3'
miRNA:   3'- -AGUGAGCa-GCU-GCAGCGCUCGCUCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.