miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16478 5' -55.6 NC_004084.1 + 683 0.68 0.579672
Target:  5'- -gGCuUCGUCGACGUCcuCGAGCGGu-- -3'
miRNA:   3'- agUG-AGCAGCUGCAGc-GCUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 870 0.69 0.558207
Target:  5'- gUCAgUCGUCGACGUCGCc-GUcGGAa -3'
miRNA:   3'- -AGUgAGCAGCUGCAGCGcuCGcUCUa -5'
16478 5' -55.6 NC_004084.1 + 3082 0.73 0.330728
Target:  5'- cCGCUCGUCGACGU-GCGuuccGGCGGGc- -3'
miRNA:   3'- aGUGAGCAGCUGCAgCGC----UCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 4832 0.7 0.495418
Target:  5'- -aGCUCGcCGAuCGUCGCGAGCa---- -3'
miRNA:   3'- agUGAGCaGCU-GCAGCGCUCGcucua -5'
16478 5' -55.6 NC_004084.1 + 8574 0.77 0.188952
Target:  5'- cUCGCUCG-CGACGUCGaCGAGUGAuucGAUg -3'
miRNA:   3'- -AGUGAGCaGCUGCAGC-GCUCGCU---CUA- -5'
16478 5' -55.6 NC_004084.1 + 9127 0.67 0.677352
Target:  5'- -gACUCGaUCGGCGUCcGuCGGGCG-GAa -3'
miRNA:   3'- agUGAGC-AGCUGCAG-C-GCUCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 9537 0.72 0.389808
Target:  5'- cUCGC-CGUCGugcauCGUCGCGAGCcccGGGAc -3'
miRNA:   3'- -AGUGaGCAGCu----GCAGCGCUCG---CUCUa -5'
16478 5' -55.6 NC_004084.1 + 11713 0.71 0.407911
Target:  5'- cCACUCGUCgcgguaGACGUCGCcGGCGAc-- -3'
miRNA:   3'- aGUGAGCAG------CUGCAGCGcUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 11915 0.75 0.245381
Target:  5'- aUCaACUCGgcgaccggCGACGUCGCGAccaGCGAGGa -3'
miRNA:   3'- -AG-UGAGCa-------GCUGCAGCGCU---CGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 13755 0.66 0.709515
Target:  5'- -gGCUCGcccUCGAgGUCGCGcugGGCGGGc- -3'
miRNA:   3'- agUGAGC---AGCUgCAGCGC---UCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 15022 0.67 0.633927
Target:  5'- -gGCUCGUCGAgCGUCGaCGGccacuCGAGGUg -3'
miRNA:   3'- agUGAGCAGCU-GCAGC-GCUc----GCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 15337 0.67 0.688129
Target:  5'- aCACUCGaCGACGUUgaggagaaagGCG-GUGAGAc -3'
miRNA:   3'- aGUGAGCaGCUGCAG----------CGCuCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 16640 0.67 0.633927
Target:  5'- aCGCccucgUCGUCGACGUCGUccGgGAGGUc -3'
miRNA:   3'- aGUG-----AGCAGCUGCAGCGcuCgCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 17164 0.69 0.516027
Target:  5'- aUCGC-CGgCGACGUCGaaGGCGAGGg -3'
miRNA:   3'- -AGUGaGCaGCUGCAGCgcUCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 17547 0.67 0.633927
Target:  5'- gUCACgagCGUCGACGacaGCGgAGCGuGGg -3'
miRNA:   3'- -AGUGa--GCAGCUGCag-CGC-UCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 18900 0.67 0.633927
Target:  5'- aUC-CUCGagGACGUCGCGAaCGAuGAc -3'
miRNA:   3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5'
16478 5' -55.6 NC_004084.1 + 19921 0.69 0.547558
Target:  5'- -uGCUCG-CGACGaUCGaGGGCGAGGa -3'
miRNA:   3'- agUGAGCaGCUGC-AGCgCUCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 20120 0.66 0.720102
Target:  5'- aCGCUCGUCGACGgaaCGUcGGUcGGAUu -3'
miRNA:   3'- aGUGAGCAGCUGCa--GCGcUCGcUCUA- -5'
16478 5' -55.6 NC_004084.1 + 22171 0.66 0.720102
Target:  5'- gCACUCGagGACGUCGacccgguaGGCGAGu- -3'
miRNA:   3'- aGUGAGCagCUGCAGCgc------UCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 22985 0.8 0.122293
Target:  5'- gUC-CUgGUCGACcUCGCGAGCGAGAUc -3'
miRNA:   3'- -AGuGAgCAGCUGcAGCGCUCGCUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.