miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16478 5' -55.6 NC_004084.1 + 26012 0.66 0.745141
Target:  5'- -aGCUCGUCGACGggaccgaacgcggacUCGauCGAGCG-GAg -3'
miRNA:   3'- agUGAGCAGCUGC---------------AGC--GCUCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 29219 0.73 0.315104
Target:  5'- -aGCgCGUCGACGuuguUCGCGGGCGAGu- -3'
miRNA:   3'- agUGaGCAGCUGC----AGCGCUCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 30935 0.77 0.179132
Target:  5'- aUCGCUCGUCGACGUCGaGcuCGAGGa -3'
miRNA:   3'- -AGUGAGCAGCUGCAGCgCucGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 31628 0.69 0.526461
Target:  5'- uUCGCUCuGggagagCGACGUUGCGuGgGGGAUg -3'
miRNA:   3'- -AGUGAG-Ca-----GCUGCAGCGCuCgCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 35348 0.7 0.475189
Target:  5'- cCAcCUCGUCG-CGUCGCcGGCGAcGAUc -3'
miRNA:   3'- aGU-GAGCAGCuGCAGCGcUCGCU-CUA- -5'
16478 5' -55.6 NC_004084.1 + 35418 0.69 0.568914
Target:  5'- gUCAUcgUCGUCGAUcUCGCucGCGAGGUc -3'
miRNA:   3'- -AGUG--AGCAGCUGcAGCGcuCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 35454 0.66 0.730603
Target:  5'- -gACUCgGUCGGCcucGUCGCGAGUGucGUg -3'
miRNA:   3'- agUGAG-CAGCUG---CAGCGCUCGCucUA- -5'
16478 5' -55.6 NC_004084.1 + 37901 0.66 0.741008
Target:  5'- gUCACcucggucucuUCGUCGAucugauguCGUCGUcGGCGGGAUc -3'
miRNA:   3'- -AGUG----------AGCAGCU--------GCAGCGcUCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 41250 0.68 0.623043
Target:  5'- cUCcCUCGccuUCGACGUCGCcGGCGAu-- -3'
miRNA:   3'- -AGuGAGC---AGCUGCAGCGcUCGCUcua -5'
16478 5' -55.6 NC_004084.1 + 42012 0.76 0.210016
Target:  5'- uUUGCUCGagUGGcCGUCGCGAGCGAGGc -3'
miRNA:   3'- -AGUGAGCa-GCU-GCAGCGCUCGCUCUa -5'
16478 5' -55.6 NC_004084.1 + 44944 0.67 0.654596
Target:  5'- aCGUUCGUCGAcgagaacggcguuCGUCGCGAGUG-GAc -3'
miRNA:   3'- aGUGAGCAGCU-------------GCAGCGCUCGCuCUa -5'
16478 5' -55.6 NC_004084.1 + 47013 0.67 0.64481
Target:  5'- uUC-CUCGagGACGUCGCGAuCGAuGAc -3'
miRNA:   3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5'
16478 5' -55.6 NC_004084.1 + 47569 0.68 0.623043
Target:  5'- aCGCcguUCGagGACGuUCGCGAGCGcGGUg -3'
miRNA:   3'- aGUG---AGCagCUGC-AGCGCUCGCuCUA- -5'
16478 5' -55.6 NC_004084.1 + 47893 0.66 0.741008
Target:  5'- -gGCUCGgcaacgCGACgGUCGCuccGCGAGGUg -3'
miRNA:   3'- agUGAGCa-----GCUG-CAGCGcu-CGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 48976 0.69 0.516027
Target:  5'- gUCGucUUCGUCGACGUCGCGGcccaucGCGcGGUc -3'
miRNA:   3'- -AGU--GAGCAGCUGCAGCGCU------CGCuCUA- -5'
16478 5' -55.6 NC_004084.1 + 49351 0.67 0.660026
Target:  5'- gUCGaggugaUCGUCGACGUCGCccGAcucuacccgcucgauGCGGGAUu -3'
miRNA:   3'- -AGUg-----AGCAGCUGCAGCG--CU---------------CGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 49844 1.06 0.001839
Target:  5'- aUCACUCGUCGACGUCGCGAGCGAGAUc -3'
miRNA:   3'- -AGUGAGCAGCUGCAGCGCUCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 50242 0.67 0.64481
Target:  5'- cCACUCugaGGCGUCGCugGAGCGGGc- -3'
miRNA:   3'- aGUGAGcagCUGCAGCG--CUCGCUCua -5'
16478 5' -55.6 NC_004084.1 + 50253 0.68 0.601306
Target:  5'- gUC-CUCGUCGcCGUUgGCG-GCGAGGUc -3'
miRNA:   3'- -AGuGAGCAGCuGCAG-CGCuCGCUCUA- -5'
16478 5' -55.6 NC_004084.1 + 52955 0.66 0.720102
Target:  5'- -gGCgUCGUCGugauCGUCGCGAGUGcgcuGGUc -3'
miRNA:   3'- agUG-AGCAGCu---GCAGCGCUCGCu---CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.