Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 47893 | 0.66 | 0.741008 |
Target: 5'- -gGCUCGgcaacgCGACgGUCGCuccGCGAGGUg -3' miRNA: 3'- agUGAGCa-----GCUG-CAGCGcu-CGCUCUA- -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 47013 | 0.67 | 0.64481 |
Target: 5'- uUC-CUCGagGACGUCGCGAuCGAuGAc -3' miRNA: 3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 50242 | 0.67 | 0.64481 |
Target: 5'- cCACUCugaGGCGUCGCugGAGCGGGc- -3' miRNA: 3'- aGUGAGcagCUGCAGCG--CUCGCUCua -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 44944 | 0.67 | 0.654596 |
Target: 5'- aCGUUCGUCGAcgagaacggcguuCGUCGCGAGUG-GAc -3' miRNA: 3'- aGUGAGCAGCU-------------GCAGCGCUCGCuCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 9127 | 0.67 | 0.677352 |
Target: 5'- -gACUCGaUCGGCGUCcGuCGGGCG-GAa -3' miRNA: 3'- agUGAGC-AGCUGCAG-C-GCUCGCuCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 15337 | 0.67 | 0.688129 |
Target: 5'- aCACUCGaCGACGUUgaggagaaagGCG-GUGAGAc -3' miRNA: 3'- aGUGAGCaGCUGCAG----------CGCuCGCUCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 22171 | 0.66 | 0.720102 |
Target: 5'- gCACUCGagGACGUCGacccgguaGGCGAGu- -3' miRNA: 3'- aGUGAGCagCUGCAGCgc------UCGCUCua -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 20120 | 0.66 | 0.720102 |
Target: 5'- aCGCUCGUCGACGgaaCGUcGGUcGGAUu -3' miRNA: 3'- aGUGAGCAGCUGCa--GCGcUCGcUCUA- -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 54150 | 0.66 | 0.741008 |
Target: 5'- aCGC-CGUUcGCGUCGaaGGGCGAGAa -3' miRNA: 3'- aGUGaGCAGcUGCAGCg-CUCGCUCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 17547 | 0.67 | 0.633927 |
Target: 5'- gUCACgagCGUCGACGacaGCGgAGCGuGGg -3' miRNA: 3'- -AGUGa--GCAGCUGCag-CGC-UCGCuCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 47569 | 0.68 | 0.623043 |
Target: 5'- aCGCcguUCGagGACGuUCGCGAGCGcGGUg -3' miRNA: 3'- aGUG---AGCagCUGC-AGCGCUCGCuCUA- -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 19921 | 0.69 | 0.547558 |
Target: 5'- -uGCUCG-CGACGaUCGaGGGCGAGGa -3' miRNA: 3'- agUGAGCaGCUGC-AGCgCUCGCUCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 22985 | 0.8 | 0.122293 |
Target: 5'- gUC-CUgGUCGACcUCGCGAGCGAGAUc -3' miRNA: 3'- -AGuGAgCAGCUGcAGCGCUCGCUCUA- -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 11915 | 0.75 | 0.245381 |
Target: 5'- aUCaACUCGgcgaccggCGACGUCGCGAccaGCGAGGa -3' miRNA: 3'- -AG-UGAGCa-------GCUGCAGCGCU---CGCUCUa -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 29219 | 0.73 | 0.315104 |
Target: 5'- -aGCgCGUCGACGuuguUCGCGGGCGAGu- -3' miRNA: 3'- agUGaGCAGCUGC----AGCGCUCGCUCua -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 3082 | 0.73 | 0.330728 |
Target: 5'- cCGCUCGUCGACGU-GCGuuccGGCGGGc- -3' miRNA: 3'- aGUGAGCAGCUGCAgCGC----UCGCUCua -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 57394 | 0.72 | 0.380956 |
Target: 5'- gCGCgcccccgaucgCGUCGACGUCGCcGGCGAGc- -3' miRNA: 3'- aGUGa----------GCAGCUGCAGCGcUCGCUCua -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 35348 | 0.7 | 0.475189 |
Target: 5'- cCAcCUCGUCG-CGUCGCcGGCGAcGAUc -3' miRNA: 3'- aGU-GAGCAGCuGCAGCGcUCGCU-CUA- -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 4832 | 0.7 | 0.495418 |
Target: 5'- -aGCUCGcCGAuCGUCGCGAGCa---- -3' miRNA: 3'- agUGAGCaGCU-GCAGCGCUCGcucua -5' |
|||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 17164 | 0.69 | 0.516027 |
Target: 5'- aUCGC-CGgCGACGUCGaaGGCGAGGg -3' miRNA: 3'- -AGUGaGCaGCUGCAGCgcUCGCUCUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home