Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16478 | 5' | -55.6 | NC_004084.1 | + | 26012 | 0.66 | 0.745141 |
Target: 5'- -aGCUCGUCGACGggaccgaacgcggacUCGauCGAGCG-GAg -3' miRNA: 3'- agUGAGCAGCUGC---------------AGC--GCUCGCuCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 48976 | 0.69 | 0.516027 |
Target: 5'- gUCGucUUCGUCGACGUCGCGGcccaucGCGcGGUc -3' miRNA: 3'- -AGU--GAGCAGCUGCAGCGCU------CGCuCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 9537 | 0.72 | 0.389808 |
Target: 5'- cUCGC-CGUCGugcauCGUCGCGAGCcccGGGAc -3' miRNA: 3'- -AGUGaGCAGCu----GCAGCGCUCG---CUCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 30935 | 0.77 | 0.179132 |
Target: 5'- aUCGCUCGUCGACGUCGaGcuCGAGGa -3' miRNA: 3'- -AGUGAGCAGCUGCAGCgCucGCUCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 13755 | 0.66 | 0.709515 |
Target: 5'- -gGCUCGcccUCGAgGUCGCGcugGGCGGGc- -3' miRNA: 3'- agUGAGC---AGCUgCAGCGC---UCGCUCua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 54221 | 0.67 | 0.677352 |
Target: 5'- -gGCUCGagucggaucUCGACGUCG-GAGCGAu-- -3' miRNA: 3'- agUGAGC---------AGCUGCAGCgCUCGCUcua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 16640 | 0.67 | 0.633927 |
Target: 5'- aCGCccucgUCGUCGACGUCGUccGgGAGGUc -3' miRNA: 3'- aGUG-----AGCAGCUGCAGCGcuCgCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 18900 | 0.67 | 0.633927 |
Target: 5'- aUC-CUCGagGACGUCGCGAaCGAuGAc -3' miRNA: 3'- -AGuGAGCagCUGCAGCGCUcGCU-CUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 50253 | 0.68 | 0.601306 |
Target: 5'- gUC-CUCGUCGcCGUUgGCG-GCGAGGUc -3' miRNA: 3'- -AGuGAGCAGCuGCAG-CGCuCGCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 31628 | 0.69 | 0.526461 |
Target: 5'- uUCGCUCuGggagagCGACGUUGCGuGgGGGAUg -3' miRNA: 3'- -AGUGAG-Ca-----GCUGCAGCGCuCgCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 56111 | 0.69 | 0.573212 |
Target: 5'- gUC-CUCGUCGACGUCGUGcgccgcagugucgucGGCGucGAc -3' miRNA: 3'- -AGuGAGCAGCUGCAGCGC---------------UCGCu-CUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 41250 | 0.68 | 0.623043 |
Target: 5'- cUCcCUCGccuUCGACGUCGCcGGCGAu-- -3' miRNA: 3'- -AGuGAGC---AGCUGCAGCGcUCGCUcua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 37901 | 0.66 | 0.741008 |
Target: 5'- gUCACcucggucucuUCGUCGAucugauguCGUCGUcGGCGGGAUc -3' miRNA: 3'- -AGUG----------AGCAGCU--------GCAGCGcUCGCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 35418 | 0.69 | 0.568914 |
Target: 5'- gUCAUcgUCGUCGAUcUCGCucGCGAGGUc -3' miRNA: 3'- -AGUG--AGCAGCUGcAGCGcuCGCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 35454 | 0.66 | 0.730603 |
Target: 5'- -gACUCgGUCGGCcucGUCGCGAGUGucGUg -3' miRNA: 3'- agUGAG-CAGCUG---CAGCGCUCGCucUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 15022 | 0.67 | 0.633927 |
Target: 5'- -gGCUCGUCGAgCGUCGaCGGccacuCGAGGUg -3' miRNA: 3'- agUGAGCAGCU-GCAGC-GCUc----GCUCUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 870 | 0.69 | 0.558207 |
Target: 5'- gUCAgUCGUCGACGUCGCc-GUcGGAa -3' miRNA: 3'- -AGUgAGCAGCUGCAGCGcuCGcUCUa -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 11713 | 0.71 | 0.407911 |
Target: 5'- cCACUCGUCgcgguaGACGUCGCcGGCGAc-- -3' miRNA: 3'- aGUGAGCAG------CUGCAGCGcUCGCUcua -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 52955 | 0.66 | 0.720102 |
Target: 5'- -gGCgUCGUCGugauCGUCGCGAGUGcgcuGGUc -3' miRNA: 3'- agUG-AGCAGCu---GCAGCGCUCGCu---CUA- -5' |
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16478 | 5' | -55.6 | NC_004084.1 | + | 49351 | 0.67 | 0.660026 |
Target: 5'- gUCGaggugaUCGUCGACGUCGCccGAcucuacccgcucgauGCGGGAUu -3' miRNA: 3'- -AGUg-----AGCAGCUGCAGCG--CU---------------CGCUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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