miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1648 5' -53.1 NC_001347.2 + 229613 0.66 0.994321
Target:  5'- gGgUGUGUCGCGGGCgugUGCcgGGUGUGUCg -3'
miRNA:   3'- -CgAUACAGCGCCUG---AUG--CUGCGCAGa -5'
1648 5' -53.1 NC_001347.2 + 134 0.66 0.994321
Target:  5'- gGgUGUGUCGCGGGCgugUGCcgGGUGUGUCg -3'
miRNA:   3'- -CgAUACAGCGCCUG---AUG--CUGCGCAGa -5'
1648 5' -53.1 NC_001347.2 + 138684 0.66 0.994321
Target:  5'- cGCUAUuuUCGCGGGCg--GGUGCGUCg -3'
miRNA:   3'- -CGAUAc-AGCGCCUGaugCUGCGCAGa -5'
1648 5' -53.1 NC_001347.2 + 228365 0.66 0.994321
Target:  5'- uGCgguggAUGUgGCGGGgUGCGGCG-GUUUc -3'
miRNA:   3'- -CGa----UACAgCGCCUgAUGCUGCgCAGA- -5'
1648 5' -53.1 NC_001347.2 + 92114 0.66 0.993471
Target:  5'- ----cGUUGUGGAUgaGCGACuGCGUCa -3'
miRNA:   3'- cgauaCAGCGCCUGa-UGCUG-CGCAGa -5'
1648 5' -53.1 NC_001347.2 + 75964 0.66 0.993471
Target:  5'- -----cUCGaCGGGCUGCGGCGaGUCg -3'
miRNA:   3'- cgauacAGC-GCCUGAUGCUGCgCAGa -5'
1648 5' -53.1 NC_001347.2 + 100731 0.66 0.990297
Target:  5'- cGUUAacggGUCGCGGACgacaaaaGCGG-GCGUCc -3'
miRNA:   3'- -CGAUa---CAGCGCCUGa------UGCUgCGCAGa -5'
1648 5' -53.1 NC_001347.2 + 182206 0.66 0.990297
Target:  5'- uGCgg-GUgGCGGGCUGCGuCGCcuUCg -3'
miRNA:   3'- -CGauaCAgCGCCUGAUGCuGCGc-AGa -5'
1648 5' -53.1 NC_001347.2 + 228569 0.66 0.990297
Target:  5'- cCUGUGcCGCGGcaGCgUACGACGUuccaGUCa -3'
miRNA:   3'- cGAUACaGCGCC--UG-AUGCUGCG----CAGa -5'
1648 5' -53.1 NC_001347.2 + 65232 0.67 0.986023
Target:  5'- cCUGUGcCGCGG-CUACGAccucaCGCGaCUg -3'
miRNA:   3'- cGAUACaGCGCCuGAUGCU-----GCGCaGA- -5'
1648 5' -53.1 NC_001347.2 + 44455 0.67 0.980436
Target:  5'- aGCUcUGccgagCGCGGGCU--GACGCGUUg -3'
miRNA:   3'- -CGAuACa----GCGCCUGAugCUGCGCAGa -5'
1648 5' -53.1 NC_001347.2 + 16862 0.68 0.967659
Target:  5'- gGCUGcGUacacaUGGGCgagGCGGCGCGUCUg -3'
miRNA:   3'- -CGAUaCAgc---GCCUGa--UGCUGCGCAGA- -5'
1648 5' -53.1 NC_001347.2 + 159901 0.69 0.964523
Target:  5'- ----aGUCGCGGuCUcGCGACGUGUa- -3'
miRNA:   3'- cgauaCAGCGCCuGA-UGCUGCGCAga -5'
1648 5' -53.1 NC_001347.2 + 83886 0.69 0.964523
Target:  5'- cGCUAcuuUCGCGGACgcgguaGCGGCaGUGUCa -3'
miRNA:   3'- -CGAUac-AGCGCCUGa-----UGCUG-CGCAGa -5'
1648 5' -53.1 NC_001347.2 + 185482 0.69 0.96118
Target:  5'- cGUUGUGgcgCGCagGGGCUccgACGugGCGUUa -3'
miRNA:   3'- -CGAUACa--GCG--CCUGA---UGCugCGCAGa -5'
1648 5' -53.1 NC_001347.2 + 193071 0.69 0.96118
Target:  5'- ----cGUCGCGGACUGcCGGCaUGUCc -3'
miRNA:   3'- cgauaCAGCGCCUGAU-GCUGcGCAGa -5'
1648 5' -53.1 NC_001347.2 + 5907 0.69 0.957626
Target:  5'- uGCga-GUCGUGGAUUacACGACGCcaGUCg -3'
miRNA:   3'- -CGauaCAGCGCCUGA--UGCUGCG--CAGa -5'
1648 5' -53.1 NC_001347.2 + 170 0.69 0.949863
Target:  5'- gGgUGUGUCGCGGGCgugUGGCGgGUg- -3'
miRNA:   3'- -CgAUACAGCGCCUGau-GCUGCgCAga -5'
1648 5' -53.1 NC_001347.2 + 229649 0.69 0.949863
Target:  5'- gGgUGUGUCGCGGGCgugUGGCGgGUg- -3'
miRNA:   3'- -CgAUACAGCGCCUGau-GCUGCgCAga -5'
1648 5' -53.1 NC_001347.2 + 78 0.7 0.931639
Target:  5'- gGgUGUGUCGCGGGCgugugUugGGUGUGUCg -3'
miRNA:   3'- -CgAUACAGCGCCUG-----AugCUGCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.