miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16480 3' -59.4 NC_004084.1 + 51722 0.65 0.5821
Target:  5'- gCCGGCguugaccucgagaUGGAcgUCGUCgagcaGCGCCGAaGCg -3'
miRNA:   3'- -GGCCG-------------ACCU--AGUAGg----CGCGGCUgCGg -5'
16480 3' -59.4 NC_004084.1 + 36113 0.66 0.57275
Target:  5'- uCCGGC-GGcguAUCGUCauCGCCGaACGCg -3'
miRNA:   3'- -GGCCGaCC---UAGUAGgcGCGGC-UGCGg -5'
16480 3' -59.4 NC_004084.1 + 49968 0.66 0.57275
Target:  5'- aCGGCUcGGcgacUCGUCU-CGCgGACGCUg -3'
miRNA:   3'- gGCCGA-CCu---AGUAGGcGCGgCUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 9896 0.66 0.571713
Target:  5'- cCCGGgaGaacccgaGAUCGaaCC-CGCCGAUGCCg -3'
miRNA:   3'- -GGCCgaC-------CUAGUa-GGcGCGGCUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 29635 0.66 0.562403
Target:  5'- gUCGGCUccGGAcgUCGacgaCCGCGCgGACaGCUg -3'
miRNA:   3'- -GGCCGA--CCU--AGUa---GGCGCGgCUG-CGG- -5'
16480 3' -59.4 NC_004084.1 + 47362 0.66 0.562403
Target:  5'- gUCGGC-GGccgccccuUCGUCCGCGUcguCGACGgCg -3'
miRNA:   3'- -GGCCGaCCu-------AGUAGGCGCG---GCUGCgG- -5'
16480 3' -59.4 NC_004084.1 + 38849 0.66 0.552108
Target:  5'- gUGGuCUGGGacgUCGUCCuCGUCGA-GCCa -3'
miRNA:   3'- gGCC-GACCU---AGUAGGcGCGGCUgCGG- -5'
16480 3' -59.4 NC_004084.1 + 14837 0.66 0.54187
Target:  5'- uCCcaCUGGAggAUCCGCGCCu-CGUCg -3'
miRNA:   3'- -GGccGACCUagUAGGCGCGGcuGCGG- -5'
16480 3' -59.4 NC_004084.1 + 10741 0.66 0.54187
Target:  5'- uCCGGUUGGGg-AUCCGgcuCGCCagugggGGCGUCg -3'
miRNA:   3'- -GGCCGACCUagUAGGC---GCGG------CUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 5159 0.66 0.54187
Target:  5'- cCCGGCccGAUCucgUCGcCGUCGACGaCCg -3'
miRNA:   3'- -GGCCGacCUAGua-GGC-GCGGCUGC-GG- -5'
16480 3' -59.4 NC_004084.1 + 16661 0.66 0.54187
Target:  5'- uCCGGgaGG-UCc-UCGuCGCCGGCGUCg -3'
miRNA:   3'- -GGCCgaCCuAGuaGGC-GCGGCUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 53133 0.66 0.531696
Target:  5'- aUGGC-GGAcCAUCCGCuGCgGgACGUCg -3'
miRNA:   3'- gGCCGaCCUaGUAGGCG-CGgC-UGCGG- -5'
16480 3' -59.4 NC_004084.1 + 43662 0.66 0.531696
Target:  5'- aCgGGCgGGccUA-CCGCGCCGAgUGCCu -3'
miRNA:   3'- -GgCCGaCCuaGUaGGCGCGGCU-GCGG- -5'
16480 3' -59.4 NC_004084.1 + 56929 0.66 0.531696
Target:  5'- aCGGC-GGAcuUCGUagUCGuCGUCGGCGCUg -3'
miRNA:   3'- gGCCGaCCU--AGUA--GGC-GCGGCUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 52952 0.67 0.511563
Target:  5'- gUCGGCgucgucGuGAUCGUCgcgagUGCGCUGGuCGCCg -3'
miRNA:   3'- -GGCCGa-----C-CUAGUAG-----GCGCGGCU-GCGG- -5'
16480 3' -59.4 NC_004084.1 + 29321 0.67 0.501616
Target:  5'- aUGuGCUGGAUgagCAUcuaCCGCGgcgaCGACGCCc -3'
miRNA:   3'- gGC-CGACCUA---GUA---GGCGCg---GCUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 45621 0.67 0.501616
Target:  5'- cCCGGCUGacaaccugucGGUCGUCgacgGCGUCucgGAUGCCg -3'
miRNA:   3'- -GGCCGAC----------CUAGUAGg---CGCGG---CUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 44584 0.67 0.491754
Target:  5'- cCUGGCUGccacgcagaGGUCAUCgccgagUGgGCCGAuCGCCu -3'
miRNA:   3'- -GGCCGAC---------CUAGUAG------GCgCGGCU-GCGG- -5'
16480 3' -59.4 NC_004084.1 + 6280 0.67 0.491754
Target:  5'- cCCGGC-GGG-CAUCCGUaaCGGUGCCa -3'
miRNA:   3'- -GGCCGaCCUaGUAGGCGcgGCUGCGG- -5'
16480 3' -59.4 NC_004084.1 + 49513 0.67 0.481982
Target:  5'- uUCGGCUuccgccucuUCGUCCGaGUCGACGCUg -3'
miRNA:   3'- -GGCCGAccu------AGUAGGCgCGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.