miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16480 5' -55.9 NC_004084.1 + 6873 0.66 0.689617
Target:  5'- -cAGCCgGuCGuGGAUGCCGAGguacgUCgGg -3'
miRNA:   3'- cuUCGGgUuGC-CCUACGGCUCa----AGgC- -5'
16480 5' -55.9 NC_004084.1 + 47863 0.66 0.689617
Target:  5'- -cGGCuCCcACGGGuUGCCGAGcgcaUCCu -3'
miRNA:   3'- cuUCG-GGuUGCCCuACGGCUCa---AGGc -5'
16480 5' -55.9 NC_004084.1 + 52659 0.66 0.678808
Target:  5'- aGAGGcCCCGGCGGGGgcagUGCCGucaucGUaauUCCc -3'
miRNA:   3'- -CUUC-GGGUUGCCCU----ACGGCu----CA---AGGc -5'
16480 5' -55.9 NC_004084.1 + 11844 0.66 0.667955
Target:  5'- --cGCCUGACGGcGAUaUCGAGUUCaCGa -3'
miRNA:   3'- cuuCGGGUUGCC-CUAcGGCUCAAG-GC- -5'
16480 5' -55.9 NC_004084.1 + 11851 0.67 0.65707
Target:  5'- --cGCCgCGAUGccGAUGCCGAGU-CCGa -3'
miRNA:   3'- cuuCGG-GUUGCc-CUACGGCUCAaGGC- -5'
16480 5' -55.9 NC_004084.1 + 4487 0.68 0.580782
Target:  5'- cGAAGCCCGacacgaaacuGCaGGAUGUCGAGaucgCCu -3'
miRNA:   3'- -CUUCGGGU----------UGcCCUACGGCUCaa--GGc -5'
16480 5' -55.9 NC_004084.1 + 10937 0.68 0.559231
Target:  5'- cGAGGUCaAAUGGGAUGgCGAGU-CCu -3'
miRNA:   3'- -CUUCGGgUUGCCCUACgGCUCAaGGc -5'
16480 5' -55.9 NC_004084.1 + 5674 0.68 0.548538
Target:  5'- -uAGuCCCAGCGGaGGUcGUCGAGgUCCGc -3'
miRNA:   3'- cuUC-GGGUUGCC-CUA-CGGCUCaAGGC- -5'
16480 5' -55.9 NC_004084.1 + 27640 0.7 0.465864
Target:  5'- aGAAGUgaUCGAgGGGAUGCCGccggggauccGGUUCCu -3'
miRNA:   3'- -CUUCG--GGUUgCCCUACGGC----------UCAAGGc -5'
16480 5' -55.9 NC_004084.1 + 13698 0.7 0.455973
Target:  5'- -cAGCCCGcgaaGGGAUGCCaGAGaUCCc -3'
miRNA:   3'- cuUCGGGUug--CCCUACGG-CUCaAGGc -5'
16480 5' -55.9 NC_004084.1 + 49080 0.77 0.169396
Target:  5'- cGAAGCCCGGCGGGAUcaaGCacccgGAGUucuUCCGa -3'
miRNA:   3'- -CUUCGGGUUGCCCUA---CGg----CUCA---AGGC- -5'
16480 5' -55.9 NC_004084.1 + 50124 1.08 0.00109
Target:  5'- cGAAGCCCAACGGGAUGCCGAGUUCCGc -3'
miRNA:   3'- -CUUCGGGUUGCCCUACGGCUCAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.