miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16481 3' -54.4 NC_004084.1 + 1705 0.65 0.801766
Target:  5'- -gUCCGAGUcccagcggaggauGGCGGCUGCUCGaUCGGu -3'
miRNA:   3'- auGGGCUCA-------------UUGCUGGUGAGCgAGCU- -5'
16481 3' -54.4 NC_004084.1 + 40791 0.66 0.793048
Target:  5'- aACUCGgcAGUAACGAgCUGCUCGCgaagcuggCGAu -3'
miRNA:   3'- aUGGGC--UCAUUGCU-GGUGAGCGa-------GCU- -5'
16481 3' -54.4 NC_004084.1 + 26267 0.66 0.783202
Target:  5'- cGCCCGuGUcccaGAUGguGCCGCUCGCgaggucugUCGAc -3'
miRNA:   3'- aUGGGCuCA----UUGC--UGGUGAGCG--------AGCU- -5'
16481 3' -54.4 NC_004084.1 + 19508 0.66 0.773199
Target:  5'- aGCCCGGG-AGCGaacGCCGgUUcgaGCUCGAa -3'
miRNA:   3'- aUGGGCUCaUUGC---UGGUgAG---CGAGCU- -5'
16481 3' -54.4 NC_004084.1 + 8663 0.66 0.763049
Target:  5'- --gCCGAGggucugGGCGAcCCACUCGagcacCUCGAa -3'
miRNA:   3'- augGGCUCa-----UUGCU-GGUGAGC-----GAGCU- -5'
16481 3' -54.4 NC_004084.1 + 43604 0.67 0.731839
Target:  5'- gAUCgCGAGU-ACGGCCGCUgGC-CGGa -3'
miRNA:   3'- aUGG-GCUCAuUGCUGGUGAgCGaGCU- -5'
16481 3' -54.4 NC_004084.1 + 49118 0.67 0.731839
Target:  5'- gGCUCGAGUGugGuguugauCCACUU-CUCGAc -3'
miRNA:   3'- aUGGGCUCAUugCu------GGUGAGcGAGCU- -5'
16481 3' -54.4 NC_004084.1 + 52279 0.67 0.725479
Target:  5'- aACCCGuGUAggaccucaccgacgaACGACCACa-GCUCa- -3'
miRNA:   3'- aUGGGCuCAU---------------UGCUGGUGagCGAGcu -5'
16481 3' -54.4 NC_004084.1 + 24344 0.67 0.72122
Target:  5'- gAUCUGAGcaacGCGACCA--CGCUCGAg -3'
miRNA:   3'- aUGGGCUCau--UGCUGGUgaGCGAGCU- -5'
16481 3' -54.4 NC_004084.1 + 39706 0.67 0.699728
Target:  5'- aACCCGccAGUGACGGCgACgaCGCcgUCGAc -3'
miRNA:   3'- aUGGGC--UCAUUGCUGgUGa-GCG--AGCU- -5'
16481 3' -54.4 NC_004084.1 + 29055 0.68 0.688878
Target:  5'- cUGCUgGcAGgccGCGACCGCcCGCUCGGg -3'
miRNA:   3'- -AUGGgC-UCau-UGCUGGUGaGCGAGCU- -5'
16481 3' -54.4 NC_004084.1 + 55284 0.68 0.688878
Target:  5'- --gCUGGGUGuCGAUCGCUUGCUCa- -3'
miRNA:   3'- augGGCUCAUuGCUGGUGAGCGAGcu -5'
16481 3' -54.4 NC_004084.1 + 2079 0.68 0.677973
Target:  5'- aGCCuCGAG-AACGGCauCGCUCGCcugCGAa -3'
miRNA:   3'- aUGG-GCUCaUUGCUG--GUGAGCGa--GCU- -5'
16481 3' -54.4 NC_004084.1 + 33770 0.68 0.667024
Target:  5'- cACUgGAGUAugGaacggucgcguaGCCACUCGCcCGGu -3'
miRNA:   3'- aUGGgCUCAUugC------------UGGUGAGCGaGCU- -5'
16481 3' -54.4 NC_004084.1 + 9574 0.68 0.645039
Target:  5'- gUACCgGAGUcgccgaagaaAGCGAUCAUUCgGCUCGu -3'
miRNA:   3'- -AUGGgCUCA----------UUGCUGGUGAG-CGAGCu -5'
16481 3' -54.4 NC_004084.1 + 47873 0.68 0.634024
Target:  5'- -cCCCGAGcuacuCGuCCGCUgGCUCGGc -3'
miRNA:   3'- auGGGCUCauu--GCuGGUGAgCGAGCU- -5'
16481 3' -54.4 NC_004084.1 + 6378 0.69 0.601006
Target:  5'- -uCCCGAcgccguaGACCGCUCGCUCa- -3'
miRNA:   3'- auGGGCUcauug--CUGGUGAGCGAGcu -5'
16481 3' -54.4 NC_004084.1 + 36380 0.69 0.587852
Target:  5'- aACCCGAGcucuaccguuCGAuCCuCUCGCUCGGu -3'
miRNA:   3'- aUGGGCUCauu-------GCU-GGuGAGCGAGCU- -5'
16481 3' -54.4 NC_004084.1 + 44227 0.7 0.557393
Target:  5'- aAUCCGAGgguauuuCGGCuCACUCGCUUGu -3'
miRNA:   3'- aUGGGCUCauu----GCUG-GUGAGCGAGCu -5'
16481 3' -54.4 NC_004084.1 + 22312 0.7 0.546619
Target:  5'- aGCCCGGGggcCGuGCCACUCGUagGAg -3'
miRNA:   3'- aUGGGCUCauuGC-UGGUGAGCGagCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.