Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16481 | 3' | -54.4 | NC_004084.1 | + | 50296 | 1.07 | 0.001755 |
Target: 5'- cUACCCGAGUAACGACCACUCGCUCGAg -3' miRNA: 3'- -AUGGGCUCAUUGCUGGUGAGCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 1705 | 0.65 | 0.801766 |
Target: 5'- -gUCCGAGUcccagcggaggauGGCGGCUGCUCGaUCGGu -3' miRNA: 3'- auGGGCUCA-------------UUGCUGGUGAGCgAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 40791 | 0.66 | 0.793048 |
Target: 5'- aACUCGgcAGUAACGAgCUGCUCGCgaagcuggCGAu -3' miRNA: 3'- aUGGGC--UCAUUGCU-GGUGAGCGa-------GCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 26267 | 0.66 | 0.783202 |
Target: 5'- cGCCCGuGUcccaGAUGguGCCGCUCGCgaggucugUCGAc -3' miRNA: 3'- aUGGGCuCA----UUGC--UGGUGAGCG--------AGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 19508 | 0.66 | 0.773199 |
Target: 5'- aGCCCGGG-AGCGaacGCCGgUUcgaGCUCGAa -3' miRNA: 3'- aUGGGCUCaUUGC---UGGUgAG---CGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 8663 | 0.66 | 0.763049 |
Target: 5'- --gCCGAGggucugGGCGAcCCACUCGagcacCUCGAa -3' miRNA: 3'- augGGCUCa-----UUGCU-GGUGAGC-----GAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 43604 | 0.67 | 0.731839 |
Target: 5'- gAUCgCGAGU-ACGGCCGCUgGC-CGGa -3' miRNA: 3'- aUGG-GCUCAuUGCUGGUGAgCGaGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 24344 | 0.67 | 0.72122 |
Target: 5'- gAUCUGAGcaacGCGACCA--CGCUCGAg -3' miRNA: 3'- aUGGGCUCau--UGCUGGUgaGCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 39706 | 0.67 | 0.699728 |
Target: 5'- aACCCGccAGUGACGGCgACgaCGCcgUCGAc -3' miRNA: 3'- aUGGGC--UCAUUGCUGgUGa-GCG--AGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 55284 | 0.68 | 0.688878 |
Target: 5'- --gCUGGGUGuCGAUCGCUUGCUCa- -3' miRNA: 3'- augGGCUCAUuGCUGGUGAGCGAGcu -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 29055 | 0.68 | 0.688878 |
Target: 5'- cUGCUgGcAGgccGCGACCGCcCGCUCGGg -3' miRNA: 3'- -AUGGgC-UCau-UGCUGGUGaGCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 39840 | 0.72 | 0.433907 |
Target: 5'- cGCUCGAGUccaucGGCGGCCGCggCGCcgUCGAg -3' miRNA: 3'- aUGGGCUCA-----UUGCUGGUGa-GCG--AGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 10016 | 0.7 | 0.525281 |
Target: 5'- -cUCCGAGaUGGCGGCCACgaugcCGCgUCGAc -3' miRNA: 3'- auGGGCUC-AUUGCUGGUGa----GCG-AGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 53299 | 0.7 | 0.525281 |
Target: 5'- aGCCgCGAGUAcguugacccgGCGAUCGCggGCUCGGu -3' miRNA: 3'- aUGG-GCUCAU----------UGCUGGUGagCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 36380 | 0.69 | 0.587852 |
Target: 5'- aACCCGAGcucuaccguuCGAuCCuCUCGCUCGGu -3' miRNA: 3'- aUGGGCUCauu-------GCU-GGuGAGCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 47873 | 0.68 | 0.634024 |
Target: 5'- -cCCCGAGcuacuCGuCCGCUgGCUCGGc -3' miRNA: 3'- auGGGCUCauu--GCuGGUGAgCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 9574 | 0.68 | 0.645039 |
Target: 5'- gUACCgGAGUcgccgaagaaAGCGAUCAUUCgGCUCGu -3' miRNA: 3'- -AUGGgCUCA----------UUGCUGGUGAG-CGAGCu -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 2079 | 0.68 | 0.677973 |
Target: 5'- aGCCuCGAG-AACGGCauCGCUCGCcugCGAa -3' miRNA: 3'- aUGG-GCUCaUUGCUG--GUGAGCGa--GCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 1281 | 0.76 | 0.261667 |
Target: 5'- cGCCCGGG-GAUGcCCgGCUCGCUCGAu -3' miRNA: 3'- aUGGGCUCaUUGCuGG-UGAGCGAGCU- -5' |
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16481 | 3' | -54.4 | NC_004084.1 | + | 52279 | 0.67 | 0.725479 |
Target: 5'- aACCCGuGUAggaccucaccgacgaACGACCACa-GCUCa- -3' miRNA: 3'- aUGGGCuCAU---------------UGCUGGUGagCGAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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