Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 54464 | 0.67 | 0.553204 |
Target: 5'- cUGUCGCCgCGGaucgucuucACGGCGGGGAUgaugUCGGGu -3' miRNA: 3'- -ACGGUGG-GCU---------UGCCGUUCUUG----GGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 45510 | 0.67 | 0.542768 |
Target: 5'- gGCCgGgCCGGuCGGCcacuccGAGGACgCCGGGa -3' miRNA: 3'- aCGG-UgGGCUuGCCG------UUCUUG-GGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 360 | 0.67 | 0.542768 |
Target: 5'- gGCCuCUCGAAacUGuGCcgcGAGCCCGGGg -3' miRNA: 3'- aCGGuGGGCUU--GC-CGuu-CUUGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 57447 | 0.67 | 0.542768 |
Target: 5'- gGCCGuCCCGGugGcacaGCAGGAugcggucCCCGGa -3' miRNA: 3'- aCGGU-GGGCUugC----CGUUCUu------GGGCCc -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 17840 | 0.67 | 0.542768 |
Target: 5'- aGCCgaGCUCGAGaCGGcCGAGAugUCGGu -3' miRNA: 3'- aCGG--UGGGCUU-GCC-GUUCUugGGCCc -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 30073 | 0.67 | 0.53965 |
Target: 5'- cGCUACUCGuccgcgagaagaagGACGGCGGcGAGCUCGaGGu -3' miRNA: 3'- aCGGUGGGC--------------UUGCCGUU-CUUGGGC-CC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 10540 | 0.67 | 0.532398 |
Target: 5'- uUGCCGagCC-AGCGGaCGAGuAGCUCGGGg -3' miRNA: 3'- -ACGGUg-GGcUUGCC-GUUC-UUGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 22023 | 0.68 | 0.51188 |
Target: 5'- cGUgACCgagcgagaggauCGAACGGU-AGAGCUCGGGu -3' miRNA: 3'- aCGgUGG------------GCUUGCCGuUCUUGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 32635 | 0.68 | 0.491696 |
Target: 5'- cGCCACCUGGagggauuccAUGGCuGAGAagcgcgaccgcaACCCGuGGg -3' miRNA: 3'- aCGGUGGGCU---------UGCCG-UUCU------------UGGGC-CC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 979 | 0.69 | 0.459232 |
Target: 5'- gUGCCACCgGGACGGCcuGAGAcgacgaucacGCUggcguaccugaucgCGGGa -3' miRNA: 3'- -ACGGUGGgCUUGCCG--UUCU----------UGG--------------GCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 29704 | 0.69 | 0.452493 |
Target: 5'- cGCCgaACCCGcGCGGCcguucGAGGAgaucgUCCGGGc -3' miRNA: 3'- aCGG--UGGGCuUGCCG-----UUCUU-----GGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 50885 | 0.69 | 0.452493 |
Target: 5'- aUGCCGuCCUGGAUGGCugcacccACUCGGGc -3' miRNA: 3'- -ACGGU-GGGCUUGCCGuucu---UGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 40586 | 0.69 | 0.442959 |
Target: 5'- gGUCACCauCGAAcuCGGCGAGGAguuCCCGGu -3' miRNA: 3'- aCGGUGG--GCUU--GCCGUUCUU---GGGCCc -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 7601 | 0.69 | 0.424237 |
Target: 5'- gUGCCggcGCCCgcGAACGGgucCAGGAcgauuCCCGGGu -3' miRNA: 3'- -ACGG---UGGG--CUUGCC---GUUCUu----GGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 41638 | 0.69 | 0.423314 |
Target: 5'- cGCCGCggCGAACGGUgcgAGGAGCgccaucaCCGGGa -3' miRNA: 3'- aCGGUGg-GCUUGCCG---UUCUUG-------GGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 22541 | 0.69 | 0.415056 |
Target: 5'- gGCCGaagacgaCCGAucacGCGGUccGGAUCCGGGu -3' miRNA: 3'- aCGGUg------GGCU----UGCCGuuCUUGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 50770 | 0.7 | 0.387385 |
Target: 5'- aGCCGCCUGcgauugugagaccGACGaGac-GAACCCGGGa -3' miRNA: 3'- aCGGUGGGC-------------UUGC-CguuCUUGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 53469 | 0.7 | 0.374439 |
Target: 5'- aGCCACUgcucgauuucguccuCGAGCGGCuGGAGCCCc-- -3' miRNA: 3'- aCGGUGG---------------GCUUGCCGuUCUUGGGccc -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 29033 | 0.7 | 0.366813 |
Target: 5'- gGCCGCCCGAccguugcucguucuGCuGGCAGGccgcgaccgcccGCUCGGGg -3' miRNA: 3'- aCGGUGGGCU--------------UG-CCGUUCu-----------UGGGCCC- -5' |
|||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 29533 | 0.71 | 0.327974 |
Target: 5'- cGCCACCC--GCGGCGAGAucucgcugcggaacGCCCa-- -3' miRNA: 3'- aCGGUGGGcuUGCCGUUCU--------------UGGGccc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home