miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16483 3' -60.2 NC_004084.1 + 48204 0.66 0.516055
Target:  5'- gCGGCGACG-GGUGGCGGaaaGCGgUGu -3'
miRNA:   3'- -GCCGUUGCuCUACCGCCggcUGCgGC- -5'
16483 3' -60.2 NC_004084.1 + 44204 0.66 0.516055
Target:  5'- uCGGUugaggaccucGACGAGcgGaUGGCCGACgGCUGg -3'
miRNA:   3'- -GCCG----------UUGCUCuaCcGCCGGCUG-CGGC- -5'
16483 3' -60.2 NC_004084.1 + 41081 0.66 0.50605
Target:  5'- aCGuCGACGAGAcgauGCgGGCCGuCGCCGc -3'
miRNA:   3'- -GCcGUUGCUCUac--CG-CCGGCuGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 42240 0.66 0.50605
Target:  5'- aCGGCgGACGGaacGGUGGUGGUCGAgugaUGCuCGa -3'
miRNA:   3'- -GCCG-UUGCU---CUACCGCCGGCU----GCG-GC- -5'
16483 3' -60.2 NC_004084.1 + 25263 0.66 0.500087
Target:  5'- gCGGUucuCGGGAUcguucugguagguccGGuUGGCCuGGCGCCGg -3'
miRNA:   3'- -GCCGuu-GCUCUA---------------CC-GCCGG-CUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 23081 0.66 0.496129
Target:  5'- -cGCGACGAGGUGGaCG-UCGGCGaCCu -3'
miRNA:   3'- gcCGUUGCUCUACC-GCcGGCUGC-GGc -5'
16483 3' -60.2 NC_004084.1 + 43654 0.66 0.486296
Target:  5'- aGGCAcgaACGGGcgGGCcuaCCG-CGCCGa -3'
miRNA:   3'- gCCGU---UGCUCuaCCGcc-GGCuGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 7476 0.66 0.473655
Target:  5'- gCGGCGACGGcGAaGGCgagacgagcaagucGGCCGACGgggagacugcgcCCGa -3'
miRNA:   3'- -GCCGUUGCU-CUaCCG--------------CCGGCUGC------------GGC- -5'
16483 3' -60.2 NC_004084.1 + 28458 0.66 0.467876
Target:  5'- aCGcGCGACGAGGacaucaccugggacUGGCacggagccaacaacgGGCUGGCGCgGg -3'
miRNA:   3'- -GC-CGUUGCUCU--------------ACCG---------------CCGGCUGCGgC- -5'
16483 3' -60.2 NC_004084.1 + 44265 0.66 0.466916
Target:  5'- cCGGCcuucacgacgacGGCGAGGUGuCGGUaugaaCGACGCUGa -3'
miRNA:   3'- -GCCG------------UUGCUCUACcGCCG-----GCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 51723 0.66 0.466916
Target:  5'- cCGGCGuugaccuCGAGAUGGaCGucGUCGagcaGCGCCGa -3'
miRNA:   3'- -GCCGUu------GCUCUACC-GC--CGGC----UGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 52937 0.66 0.466916
Target:  5'- -uGCGACGAucUGGCcGUCGGCGUCGu -3'
miRNA:   3'- gcCGUUGCUcuACCGcCGGCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 2760 0.67 0.46118
Target:  5'- aGGUcaucAACGAGGUGgaGCGcGCCGAugggugagacggaccCGCCGa -3'
miRNA:   3'- gCCG----UUGCUCUAC--CGC-CGGCU---------------GCGGC- -5'
16483 3' -60.2 NC_004084.1 + 9847 0.67 0.447943
Target:  5'- aGGuCGGCGAG--GGCGGCUcACGCgGg -3'
miRNA:   3'- gCC-GUUGCUCuaCCGCCGGcUGCGgC- -5'
16483 3' -60.2 NC_004084.1 + 48915 0.67 0.438617
Target:  5'- uCGGCcACGAcuuc-CGGUCGGCGCCGg -3'
miRNA:   3'- -GCCGuUGCUcuaccGCCGGCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 8802 0.67 0.429404
Target:  5'- cCGGCGACGAGAUcuCcGUCGACGgCGa -3'
miRNA:   3'- -GCCGUUGCUCUAccGcCGGCUGCgGC- -5'
16483 3' -60.2 NC_004084.1 + 43791 0.67 0.420306
Target:  5'- cCGGCGGaGAGuccGGCGGCgaGgaGCGCCGg -3'
miRNA:   3'- -GCCGUUgCUCua-CCGCCGg-C--UGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 29388 0.67 0.411325
Target:  5'- aCGaGCAACGGucgGGCGGCCacuccuggGGCGUCGc -3'
miRNA:   3'- -GC-CGUUGCUcuaCCGCCGG--------CUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 25463 0.68 0.385111
Target:  5'- uGGCuuCGAGGUucGCGGgCGGCGUCa -3'
miRNA:   3'- gCCGuuGCUCUAc-CGCCgGCUGCGGc -5'
16483 3' -60.2 NC_004084.1 + 1226 0.68 0.385111
Target:  5'- uCGGCGGCGGGAUcgagGGCGaUCG-CGCCc -3'
miRNA:   3'- -GCCGUUGCUCUA----CCGCcGGCuGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.