miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16483 3' -60.2 NC_004084.1 + 29343 0.68 0.376622
Target:  5'- gCGGCGACGAcgcccccgaGcgGGCGGUCG-CgGCCu -3'
miRNA:   3'- -GCCGUUGCU---------CuaCCGCCGGCuG-CGGc -5'
16483 3' -60.2 NC_004084.1 + 30341 0.68 0.376622
Target:  5'- cCGuCGGCGAGGUGGCcGaCGGCGUCGg -3'
miRNA:   3'- -GCcGUUGCUCUACCGcCgGCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 11096 0.68 0.371589
Target:  5'- uCGGCGACGAGAUcgccguucGCGGCuCGAaggaugucccagagcCGCUGg -3'
miRNA:   3'- -GCCGUUGCUCUAc-------CGCCG-GCU---------------GCGGC- -5'
16483 3' -60.2 NC_004084.1 + 41760 0.68 0.36826
Target:  5'- cCGGCGACGAGGaccuccCGGaCGACGUCGa -3'
miRNA:   3'- -GCCGUUGCUCUacc---GCCgGCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 18024 0.68 0.367431
Target:  5'- aCGGCGAgugugauguggucCGAGAccaugucGGCGGCUuuGAUGCCGc -3'
miRNA:   3'- -GCCGUU-------------GCUCUa------CCGCCGG--CUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 15276 0.69 0.351922
Target:  5'- aGGCGGCGGcaauauccGGCGGCUGGCGaCGg -3'
miRNA:   3'- gCCGUUGCUcua-----CCGCCGGCUGCgGC- -5'
16483 3' -60.2 NC_004084.1 + 17270 0.69 0.347122
Target:  5'- uCGGCGAUGcccucgguggaggcGGUGGCGGCgGugGCgGc -3'
miRNA:   3'- -GCCGUUGCu-------------CUACCGCCGgCugCGgC- -5'
16483 3' -60.2 NC_004084.1 + 35945 0.69 0.336104
Target:  5'- cCGGCGucgcCGGGGUcGGCGGCCG-UGaCCa -3'
miRNA:   3'- -GCCGUu---GCUCUA-CCGCCGGCuGC-GGc -5'
16483 3' -60.2 NC_004084.1 + 49639 0.69 0.336104
Target:  5'- gGGCuccguCGAGAUGGagucggcguacCGGCUGAaGCCGg -3'
miRNA:   3'- gCCGuu---GCUCUACC-----------GCCGGCUgCGGC- -5'
16483 3' -60.2 NC_004084.1 + 22666 0.69 0.328392
Target:  5'- aCGGgAuCGAGAUGGCagaGGCCuGGgGCCa -3'
miRNA:   3'- -GCCgUuGCUCUACCG---CCGG-CUgCGGc -5'
16483 3' -60.2 NC_004084.1 + 9705 0.69 0.313363
Target:  5'- -cGCggUGAGuUGGCcgacGCCGAUGCCGg -3'
miRNA:   3'- gcCGuuGCUCuACCGc---CGGCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 30426 0.7 0.291807
Target:  5'- gCGGCGACGGaagcGAUGGCGaGgaCGACGUCc -3'
miRNA:   3'- -GCCGUUGCU----CUACCGC-Cg-GCUGCGGc -5'
16483 3' -60.2 NC_004084.1 + 21759 0.7 0.284884
Target:  5'- aCGGUuccACGGGGaucGGCGGCauCGACGUCGg -3'
miRNA:   3'- -GCCGu--UGCUCUa--CCGCCG--GCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 51160 0.71 0.264894
Target:  5'- aGGCGAuCGAGAcGGUcGCCGagcacGCGCCGa -3'
miRNA:   3'- gCCGUU-GCUCUaCCGcCGGC-----UGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 22472 0.71 0.264894
Target:  5'- aCGGCuGCGuGGUGGCGGCUccaguucggGACGUa- -3'
miRNA:   3'- -GCCGuUGCuCUACCGCCGG---------CUGCGgc -5'
16483 3' -60.2 NC_004084.1 + 54063 0.71 0.258488
Target:  5'- aCGcGCGACGAGGagacgGGCGaGCCGAC-CCu -3'
miRNA:   3'- -GC-CGUUGCUCUa----CCGC-CGGCUGcGGc -5'
16483 3' -60.2 NC_004084.1 + 30584 0.71 0.251588
Target:  5'- uCGGCGaaccggaGCGGGGUgaGGUGGCgcgggaucuucuCGACGCCGa -3'
miRNA:   3'- -GCCGU-------UGCUCUA--CCGCCG------------GCUGCGGC- -5'
16483 3' -60.2 NC_004084.1 + 56974 0.72 0.222682
Target:  5'- gCGGUccgAGCGaAGGaGGCGGCCGAggacggcgaCGCCGa -3'
miRNA:   3'- -GCCG---UUGC-UCUaCCGCCGGCU---------GCGGC- -5'
16483 3' -60.2 NC_004084.1 + 55971 0.72 0.206415
Target:  5'- aCGGCGACGcGGA-GG-GGCUGAuCGCCGa -3'
miRNA:   3'- -GCCGUUGC-UCUaCCgCCGGCU-GCGGC- -5'
16483 3' -60.2 NC_004084.1 + 2258 0.73 0.191185
Target:  5'- gGGCcuccgaaagcugGAgGAGAUGGggcUGGUCGACGCCGa -3'
miRNA:   3'- gCCG------------UUgCUCUACC---GCCGGCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.