miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16483 5' -55.2 NC_004084.1 + 16595 0.66 0.720992
Target:  5'- gUCgGAGcGGCGACugcuGCGCUGAUCggucUGUg -3'
miRNA:   3'- aAG-CUC-CCGCUG----UGCGACUAGau--GCA- -5'
16483 5' -55.2 NC_004084.1 + 36232 0.66 0.720992
Target:  5'- cUCGAGGGCaAC-CGgUGGgcgCUGCGa -3'
miRNA:   3'- aAGCUCCCGcUGuGCgACUa--GAUGCa -5'
16483 5' -55.2 NC_004084.1 + 20853 0.66 0.710236
Target:  5'- -cCGAGGGUGGCACGUcGAccgCgccgGCGa -3'
miRNA:   3'- aaGCUCCCGCUGUGCGaCUa--Ga---UGCa -5'
16483 5' -55.2 NC_004084.1 + 5318 0.67 0.666553
Target:  5'- cUUCGAGGGcCGACuCGaaGAUC-ACGUc -3'
miRNA:   3'- -AAGCUCCC-GCUGuGCgaCUAGaUGCA- -5'
16483 5' -55.2 NC_004084.1 + 22455 0.67 0.655523
Target:  5'- cUUCGGGGGCG-CuCGCgacggCUGCGUg -3'
miRNA:   3'- -AAGCUCCCGCuGuGCGacua-GAUGCA- -5'
16483 5' -55.2 NC_004084.1 + 21479 0.67 0.622343
Target:  5'- cUCGAGGGCGGCGauCGCcucggUUGCGUc -3'
miRNA:   3'- aAGCUCCCGCUGU--GCGacua-GAUGCA- -5'
16483 5' -55.2 NC_004084.1 + 30781 0.68 0.582651
Target:  5'- cUCGAGGcguacgcgauccagcGCGAgACGCUGcUCUACa- -3'
miRNA:   3'- aAGCUCC---------------CGCUgUGCGACuAGAUGca -5'
16483 5' -55.2 NC_004084.1 + 1237 0.68 0.567338
Target:  5'- aUCGAGGGCGAuCGCGCccAUCUccucauccuggACGa -3'
miRNA:   3'- aAGCUCCCGCU-GUGCGacUAGA-----------UGCa -5'
16483 5' -55.2 NC_004084.1 + 36957 0.69 0.555379
Target:  5'- cUCGAGGGCGAgccgguuccucguCACGUccgGAUCaACGa -3'
miRNA:   3'- aAGCUCCCGCU-------------GUGCGa--CUAGaUGCa -5'
16483 5' -55.2 NC_004084.1 + 45718 0.69 0.513644
Target:  5'- cUCGAGGGaucCGACGCgguGCUGGUCggcUACGa -3'
miRNA:   3'- aAGCUCCC---GCUGUG---CGACUAG---AUGCa -5'
16483 5' -55.2 NC_004084.1 + 39155 0.7 0.472234
Target:  5'- -gCGAGGGCGACgACGCUGcaaCUcaaACGg -3'
miRNA:   3'- aaGCUCCCGCUG-UGCGACua-GA---UGCa -5'
16483 5' -55.2 NC_004084.1 + 51425 1.04 0.002168
Target:  5'- cUUCGAGGGCGACACGCUGAUCUACGUu -3'
miRNA:   3'- -AAGCUCCCGCUGUGCGACUAGAUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.