miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16485 3' -57.6 NC_004084.1 + 47569 0.66 0.61478
Target:  5'- aCGCCG--UUCGAGgacguucgcGAGCGCgGUGGCg -3'
miRNA:   3'- aGCGGUgaGAGCUU---------CUCGCG-CACCGa -5'
16485 3' -57.6 NC_004084.1 + 51186 0.67 0.550427
Target:  5'- gCGCCGaUCgUCGAGGucggcgcuGGCGCG-GGCUa -3'
miRNA:   3'- aGCGGUgAG-AGCUUC--------UCGCGCaCCGA- -5'
16485 3' -57.6 NC_004084.1 + 31623 0.67 0.539876
Target:  5'- cUCGauuCGCUCUgGGAGAGCGaCGUuGCg -3'
miRNA:   3'- -AGCg--GUGAGAgCUUCUCGC-GCAcCGa -5'
16485 3' -57.6 NC_004084.1 + 29191 0.67 0.536724
Target:  5'- cUCGCC-CUgCUCGGcgucgauguuccAGAGCGCGUcgacguuguucgcgGGCg -3'
miRNA:   3'- -AGCGGuGA-GAGCU------------UCUCGCGCA--------------CCGa -5'
16485 3' -57.6 NC_004084.1 + 53951 0.67 0.523143
Target:  5'- uUCGCCAg-CUCGAAcucgaucguccagucGGGCGCGUcgaGGCc -3'
miRNA:   3'- -AGCGGUgaGAGCUU---------------CUCGCGCA---CCGa -5'
16485 3' -57.6 NC_004084.1 + 37592 0.67 0.51899
Target:  5'- -aGgCACUCUCGggGAGCGCu----- -3'
miRNA:   3'- agCgGUGAGAGCuuCUCGCGcaccga -5'
16485 3' -57.6 NC_004084.1 + 25332 0.7 0.349997
Target:  5'- gCGCCcCuUCUCGcAGGGCuCGUGGCUc -3'
miRNA:   3'- aGCGGuG-AGAGCuUCUCGcGCACCGA- -5'
16485 3' -57.6 NC_004084.1 + 35710 0.71 0.341012
Target:  5'- -aGCCGCaCUCGAgguucucAGGGCGCGaggUGGCa -3'
miRNA:   3'- agCGGUGaGAGCU-------UCUCGCGC---ACCGa -5'
16485 3' -57.6 NC_004084.1 + 21015 0.73 0.254556
Target:  5'- -gGCCAUcCUCGA--GGCGCGUGGUg -3'
miRNA:   3'- agCGGUGaGAGCUucUCGCGCACCGa -5'
16485 3' -57.6 NC_004084.1 + 51838 1.07 0.000813
Target:  5'- gUCGCCACUCUCGAAGAGCGCGUGGCUc -3'
miRNA:   3'- -AGCGGUGAGAGCUUCUCGCGCACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.