Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16486 | 3' | -58.8 | NC_004084.1 | + | 3477 | 0.66 | 0.576971 |
Target: 5'- -cGCAUCCCGaggcggaggaUCCcgaucgagACGGCGAgCAGUa -3' miRNA: 3'- ccUGUAGGGCg---------AGG--------UGCCGCUgGUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 3940 | 0.7 | 0.317941 |
Target: 5'- cGACAUcaucCCCGCcgugaagacgaUCCGCGGCGA-CAGUg -3' miRNA: 3'- cCUGUA----GGGCG-----------AGGUGCCGCUgGUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 5281 | 0.66 | 0.556004 |
Target: 5'- cGACGUCCCGCagcggauggUCCGCcauccacucGGCGGCUccgucgAGUg -3' miRNA: 3'- cCUGUAGGGCG---------AGGUG---------CCGCUGG------UCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 5361 | 0.66 | 0.566462 |
Target: 5'- cGGACGUCUCGUUuaCUGCGGaCGccguGCCAGc -3' miRNA: 3'- -CCUGUAGGGCGA--GGUGCC-GC----UGGUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 8160 | 0.67 | 0.50469 |
Target: 5'- aGGACcUCgCCGC-CaACGGCGACgAGg -3' miRNA: 3'- -CCUGuAG-GGCGaGgUGCCGCUGgUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 8400 | 0.67 | 0.494664 |
Target: 5'- gGGACAcCCCGCUCgGCGacaacGUGAUCAu- -3' miRNA: 3'- -CCUGUaGGGCGAGgUGC-----CGCUGGUca -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 13893 | 0.66 | 0.535263 |
Target: 5'- aGGACcuuccCCUGCagCugGGCGACCGc- -3' miRNA: 3'- -CCUGua---GGGCGagGugCCGCUGGUca -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 21202 | 0.66 | 0.566462 |
Target: 5'- cGGAuCAUCCaGUacaUCgGCGGCGaaGCCGGUg -3' miRNA: 3'- -CCU-GUAGGgCG---AGgUGCCGC--UGGUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 25198 | 0.68 | 0.445056 |
Target: 5'- gGGACggCCCGCUCgGCcgccucugucuucGGCucCCAGUa -3' miRNA: 3'- -CCUGuaGGGCGAGgUG-------------CCGcuGGUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 29069 | 0.66 | 0.545602 |
Target: 5'- cGACcgCCCGCUCgGgGGCGucgucGCCgcGGUa -3' miRNA: 3'- cCUGuaGGGCGAGgUgCCGC-----UGG--UCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 29518 | 0.66 | 0.545602 |
Target: 5'- cGGGCAcaCCCGCUUCGCcacccGCGGCgAGa -3' miRNA: 3'- -CCUGUa-GGGCGAGGUGc----CGCUGgUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 29931 | 0.66 | 0.535263 |
Target: 5'- cGGCguuGUCCUGCUCaccagaACGGCGAUCGu- -3' miRNA: 3'- cCUG---UAGGGCGAGg-----UGCCGCUGGUca -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 30451 | 0.68 | 0.436591 |
Target: 5'- cGACGUCCCGCuggggacguuccUCUACgaGGCGcuGCCGGa -3' miRNA: 3'- cCUGUAGGGCG------------AGGUG--CCGC--UGGUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 35523 | 0.73 | 0.211848 |
Target: 5'- gGGACAUCCUGCgcgugaucgaggaCCuCGGCGGCgAGUg -3' miRNA: 3'- -CCUGUAGGGCGa------------GGuGCCGCUGgUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 35900 | 0.69 | 0.373243 |
Target: 5'- cGGACGUCCCGCUggaguggCCGCGuCGAgUGGa -3' miRNA: 3'- -CCUGUAGGGCGA-------GGUGCcGCUgGUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 43722 | 0.67 | 0.494664 |
Target: 5'- aGGACG-CCa--UCgAUGGCGACCGGUu -3' miRNA: 3'- -CCUGUaGGgcgAGgUGCCGCUGGUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 44752 | 0.66 | 0.576971 |
Target: 5'- cGACggCCUGCUCCAgguUGGCGAagacgagaCGGUc -3' miRNA: 3'- cCUGuaGGGCGAGGU---GCCGCUg-------GUCA- -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 47148 | 0.83 | 0.046525 |
Target: 5'- gGGGCAcucguaccUCCUGCUCUACGGCGACUGGg -3' miRNA: 3'- -CCUGU--------AGGGCGAGGUGCCGCUGGUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 51062 | 0.67 | 0.514801 |
Target: 5'- cGGAgCGaaCCGCgccUCCugGGaCGACCGGg -3' miRNA: 3'- -CCU-GUagGGCG---AGGugCC-GCUGGUCa -5' |
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16486 | 3' | -58.8 | NC_004084.1 | + | 51962 | 1.1 | 0.000492 |
Target: 5'- aGGACAUCCCGCUCCACGGCGACCAGUg -3' miRNA: 3'- -CCUGUAGGGCGAGGUGCCGCUGGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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