miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16488 3' -60.6 NC_004084.1 + 52512 0.66 0.490646
Target:  5'- aUGGuccAGCUCGuacggCGUCAGGAcgauCCCCGu -3'
miRNA:   3'- gACC---UCGGGCua---GCGGUCCUu---GGGGC- -5'
16488 3' -60.6 NC_004084.1 + 21165 0.66 0.489662
Target:  5'- -aGcGAGuCCuCGAcgagCGCCGGGAcgcgguucuucucGCCCCGg -3'
miRNA:   3'- gaC-CUC-GG-GCUa---GCGGUCCU-------------UGGGGC- -5'
16488 3' -60.6 NC_004084.1 + 36735 0.66 0.484754
Target:  5'- cCUGGAGCacuuCGAUCGCgaagagaucgaccuuCAGGAggaggAgCCCGg -3'
miRNA:   3'- -GACCUCGg---GCUAGCG---------------GUCCU-----UgGGGC- -5'
16488 3' -60.6 NC_004084.1 + 19505 0.66 0.480845
Target:  5'- -aGGAGCCCGGgagcgaaCGCCGGuucGAGCUCg- -3'
miRNA:   3'- gaCCUCGGGCUa------GCGGUC---CUUGGGgc -5'
16488 3' -60.6 NC_004084.1 + 57354 0.66 0.477923
Target:  5'- cCUGGAucugguuguucaucGCCCaGAU-GCCucGGAAUCCCGa -3'
miRNA:   3'- -GACCU--------------CGGG-CUAgCGGu-CCUUGGGGC- -5'
16488 3' -60.6 NC_004084.1 + 5107 0.66 0.47114
Target:  5'- --cGAGCCCgcGAUCGCCGGGucaacguACUCgCGg -3'
miRNA:   3'- gacCUCGGG--CUAGCGGUCCu------UGGG-GC- -5'
16488 3' -60.6 NC_004084.1 + 47676 0.67 0.424197
Target:  5'- aCUGGcgAGCCgGAUCcCCAaccGGAaaccgACCCCGa -3'
miRNA:   3'- -GACC--UCGGgCUAGcGGU---CCU-----UGGGGC- -5'
16488 3' -60.6 NC_004084.1 + 1271 0.67 0.424197
Target:  5'- uCUGGG---UGAUCGCCcgGGGAugCCCGg -3'
miRNA:   3'- -GACCUcggGCUAGCGG--UCCUugGGGC- -5'
16488 3' -60.6 NC_004084.1 + 53497 0.68 0.37173
Target:  5'- gCUGGAGCCCcucGAcguagUGCUcgAGGAACUCCu -3'
miRNA:   3'- -GACCUCGGG---CUa----GCGG--UCCUUGGGGc -5'
16488 3' -60.6 NC_004084.1 + 7335 0.68 0.363426
Target:  5'- -aGGAcuucgaucGCCCGGUCGucCCAGGAggcgcgguucGCUCCGa -3'
miRNA:   3'- gaCCU--------CGGGCUAGC--GGUCCU----------UGGGGC- -5'
16488 3' -60.6 NC_004084.1 + 54640 0.68 0.347207
Target:  5'- uUGGua-CCGAUCGCCAGcGACgCCGa -3'
miRNA:   3'- gACCucgGGCUAGCGGUCcUUGgGGC- -5'
16488 3' -60.6 NC_004084.1 + 16690 0.69 0.293882
Target:  5'- -cGGGGCCucgacguuggucgCGAUCGuCCAGGAACUCa- -3'
miRNA:   3'- gaCCUCGG-------------GCUAGC-GGUCCUUGGGgc -5'
16488 3' -60.6 NC_004084.1 + 27942 0.71 0.219187
Target:  5'- uCUGGAGUCCGGcagCGCCucguagAGGAAcguCCCCa -3'
miRNA:   3'- -GACCUCGGGCUa--GCGG------UCCUU---GGGGc -5'
16488 3' -60.6 NC_004084.1 + 34394 0.78 0.06961
Target:  5'- -gGGAGCCCGcaaccgcguccAUCGCCgucuGGGAGCCCCc -3'
miRNA:   3'- gaCCUCGGGC-----------UAGCGG----UCCUUGGGGc -5'
16488 3' -60.6 NC_004084.1 + 52260 1.09 0.000359
Target:  5'- cCUGGAGCCCGAUCGCCAGGAACCCCGg -3'
miRNA:   3'- -GACCUCGGGCUAGCGGUCCUUGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.