miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16488 5' -52.6 NC_004084.1 + 1231 0.66 0.871004
Target:  5'- gGCGGGAUCGagggcgAUCGcgcccaucuccucauCCUGGACGAc -3'
miRNA:   3'- gCGCCUUAGCg-----UAGCu--------------GGACUUGCUu -5'
16488 5' -52.6 NC_004084.1 + 2306 0.66 0.870199
Target:  5'- uGCGGcgcaCGaCGUCGACgaGGACGAu -3'
miRNA:   3'- gCGCCuua-GC-GUAGCUGgaCUUGCUu -5'
16488 5' -52.6 NC_004084.1 + 385 0.66 0.868583
Target:  5'- cCGgGGAcgucgccgccgauGUCGCAgacgucgUCGAUCUGGACGu- -3'
miRNA:   3'- -GCgCCU-------------UAGCGU-------AGCUGGACUUGCuu -5'
16488 5' -52.6 NC_004084.1 + 8889 0.66 0.862014
Target:  5'- cCGCuGAca-GCGUCGACUcGGACGAAg -3'
miRNA:   3'- -GCGcCUuagCGUAGCUGGaCUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 36331 0.66 0.862014
Target:  5'- uGCG---UCGUagagGUCGACCUGAACGu- -3'
miRNA:   3'- gCGCcuuAGCG----UAGCUGGACUUGCuu -5'
16488 5' -52.6 NC_004084.1 + 48024 0.66 0.853582
Target:  5'- uCGCGGAGuucuUCGCGcUCGaucGCCUGcuCGAc -3'
miRNA:   3'- -GCGCCUU----AGCGU-AGC---UGGACuuGCUu -5'
16488 5' -52.6 NC_004084.1 + 28983 0.66 0.84491
Target:  5'- gCGCGcGAcCGaCGUCGGCCUGAugaccGCGAu -3'
miRNA:   3'- -GCGCcUUaGC-GUAGCUGGACU-----UGCUu -5'
16488 5' -52.6 NC_004084.1 + 57358 0.66 0.84491
Target:  5'- gCGCGacGAGUgGCuguUCGACCUcGGCGAAc -3'
miRNA:   3'- -GCGC--CUUAgCGu--AGCUGGAcUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 16284 0.67 0.817546
Target:  5'- cCGCGGugcucgUGCAUCG-CCUcGACGAGa -3'
miRNA:   3'- -GCGCCuua---GCGUAGCuGGAcUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 7288 0.68 0.778299
Target:  5'- -uCGGGAUCGCccaagCGuacuCCUGGACGAGc -3'
miRNA:   3'- gcGCCUUAGCGua---GCu---GGACUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 35697 0.69 0.725816
Target:  5'- gGCGGAcuucGUCGgGUCGcucGCCgGGACGAu -3'
miRNA:   3'- gCGCCU----UAGCgUAGC---UGGaCUUGCUu -5'
16488 5' -52.6 NC_004084.1 + 42311 0.69 0.714982
Target:  5'- gGCGacGAUCGCGaCGACCgucgGGACGAGa -3'
miRNA:   3'- gCGCc-UUAGCGUaGCUGGa---CUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 44448 0.69 0.704064
Target:  5'- cCGCGuucagUGCAUCGACCgguuccgGAGCGAGu -3'
miRNA:   3'- -GCGCcuua-GCGUAGCUGGa------CUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 40900 0.69 0.693073
Target:  5'- uGCGGcgaCGCuggaGGCCUGGACGAGg -3'
miRNA:   3'- gCGCCuuaGCGuag-CUGGACUUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 48011 0.69 0.693073
Target:  5'- uGCGaGAugGUCGa--CGACCUGGACGAc -3'
miRNA:   3'- gCGC-CU--UAGCguaGCUGGACUUGCUu -5'
16488 5' -52.6 NC_004084.1 + 56931 0.69 0.680913
Target:  5'- gGCGGAcuucguaGUCGuCGUCGGCgCUGAACu-- -3'
miRNA:   3'- gCGCCU-------UAGC-GUAGCUG-GACUUGcuu -5'
16488 5' -52.6 NC_004084.1 + 16946 0.7 0.637436
Target:  5'- gGCGGGcGUCGCgacGUCGggucuucgagcGCCUGGACGAc -3'
miRNA:   3'- gCGCCU-UAGCG---UAGC-----------UGGACUUGCUu -5'
16488 5' -52.6 NC_004084.1 + 19376 0.74 0.424368
Target:  5'- aCGUcccGAUCGCAUCGACCUGGGCa-- -3'
miRNA:   3'- -GCGcc-UUAGCGUAGCUGGACUUGcuu -5'
16488 5' -52.6 NC_004084.1 + 29055 0.77 0.295319
Target:  5'- aCGCGGGAUCccggGCGUCGACCaGcGCGAGu -3'
miRNA:   3'- -GCGCCUUAG----CGUAGCUGGaCuUGCUU- -5'
16488 5' -52.6 NC_004084.1 + 52294 1.06 0.003234
Target:  5'- uCGCGGAAUCGCAUCGACCUGAACGAAc -3'
miRNA:   3'- -GCGCCUUAGCGUAGCUGGACUUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.