miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16489 3' -55 NC_004084.1 + 18104 0.72 0.423586
Target:  5'- gGACGUCaggUCGAggucggggauguccgGCUCGGCCCGGaUGGAg -3'
miRNA:   3'- -CUGCAGg--AGCU---------------UGAGUUGGGUC-GCCU- -5'
16489 3' -55 NC_004084.1 + 19969 0.7 0.519656
Target:  5'- cGCGaUCCUCGAggccgcagggGC-CGACCCAGCGa- -3'
miRNA:   3'- cUGC-AGGAGCU----------UGaGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 20037 0.7 0.488591
Target:  5'- --gGUCCUCGGucgccuucccgcGCUCGAUCCGGCGu- -3'
miRNA:   3'- cugCAGGAGCU------------UGAGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 21621 0.66 0.745997
Target:  5'- gGACGaUCUUCGAcUUgGACCgcCAGCGGGg -3'
miRNA:   3'- -CUGC-AGGAGCUuGAgUUGG--GUCGCCU- -5'
16489 3' -55 NC_004084.1 + 22151 0.69 0.573004
Target:  5'- -cCGUCCUUGAGg-UAGCCCagcuGGCGGAg -3'
miRNA:   3'- cuGCAGGAGCUUgaGUUGGG----UCGCCU- -5'
16489 3' -55 NC_004084.1 + 22711 0.67 0.692974
Target:  5'- gGAuCGUCCcggCGAGCgacccgacgaagUCcGCCCAGCGGu -3'
miRNA:   3'- -CU-GCAGGa--GCUUG------------AGuUGGGUCGCCu -5'
16489 3' -55 NC_004084.1 + 23688 0.67 0.697287
Target:  5'- --gGUCCgCGAGCUCAucgcgaaccggcgacGCCCGGaaaGGAc -3'
miRNA:   3'- cugCAGGaGCUUGAGU---------------UGGGUCg--CCU- -5'
16489 3' -55 NC_004084.1 + 25166 0.68 0.649438
Target:  5'- cGACGUCCUCGAcgucCUCAucgaACUCguAGgGGAc -3'
miRNA:   3'- -CUGCAGGAGCUu---GAGU----UGGG--UCgCCU- -5'
16489 3' -55 NC_004084.1 + 26019 0.75 0.286846
Target:  5'- cGACGggaCCgaacgCGGACUCGAUCgAGCGGAg -3'
miRNA:   3'- -CUGCa--GGa----GCUUGAGUUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 26394 0.73 0.356384
Target:  5'- aGAgGUCCUCGAACccgagcccuuccgUCGcgugGCCCuGCGGAu -3'
miRNA:   3'- -CUgCAGGAGCUUG-------------AGU----UGGGuCGCCU- -5'
16489 3' -55 NC_004084.1 + 26814 0.68 0.616583
Target:  5'- cGGCGUCCauuacaaGAGCUUGAaCCGGUGGAa -3'
miRNA:   3'- -CUGCAGGag-----CUUGAGUUgGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 27155 0.67 0.703739
Target:  5'- cACGU--UCGAGCUCGACCgCGGUGaGAa -3'
miRNA:   3'- cUGCAggAGCUUGAGUUGG-GUCGC-CU- -5'
16489 3' -55 NC_004084.1 + 27475 0.76 0.221971
Target:  5'- cGGCGUCCUCGAGCUCGACgUcgacgaGGCGa- -3'
miRNA:   3'- -CUGCAGGAGCUUGAGUUGgG------UCGCcu -5'
16489 3' -55 NC_004084.1 + 28137 0.71 0.438876
Target:  5'- uGACGUCCUCGu-CUCGAUacuUCGGCuGGAa -3'
miRNA:   3'- -CUGCAGGAGCuuGAGUUG---GGUCG-CCU- -5'
16489 3' -55 NC_004084.1 + 30774 0.7 0.519656
Target:  5'- cGACcUCCUCGAgGCguacgCGAUCCAGCGcGAg -3'
miRNA:   3'- -CUGcAGGAGCU-UGa----GUUGGGUCGC-CU- -5'
16489 3' -55 NC_004084.1 + 31980 0.71 0.478429
Target:  5'- cGACGUCCUCGugaUCGACCUGGauccgcaGGGc -3'
miRNA:   3'- -CUGCAGGAGCuugAGUUGGGUCg------CCU- -5'
16489 3' -55 NC_004084.1 + 34814 0.75 0.272769
Target:  5'- uGACG-CUUCGAGCgCAGuuCCCGGCGGAg -3'
miRNA:   3'- -CUGCaGGAGCUUGaGUU--GGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 34830 0.67 0.68215
Target:  5'- cGCGUCCaucgCGAucuggcuCUCGACgaCAGCGGGg -3'
miRNA:   3'- cUGCAGGa---GCUu------GAGUUGg-GUCGCCU- -5'
16489 3' -55 NC_004084.1 + 35678 0.68 0.627534
Target:  5'- cGAUGUCCUCGuAC-C-GCUgGGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCuUGaGuUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 36255 0.69 0.571922
Target:  5'- cGACGUCCUCGAgugcgccgaggcGCUCGcgGucagucaucgcuuCCCAGcCGGGg -3'
miRNA:   3'- -CUGCAGGAGCU------------UGAGU--U-------------GGGUC-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.