miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16489 3' -55 NC_004084.1 + 36885 0.65 0.776529
Target:  5'- gGGCcUCCUCaAGCUCGgcgaACUCGGCGGc -3'
miRNA:   3'- -CUGcAGGAGcUUGAGU----UGGGUCGCCu -5'
16489 3' -55 NC_004084.1 + 38897 0.77 0.210598
Target:  5'- aGCGUCUUCGAGCUCGAaCCGGCGu- -3'
miRNA:   3'- cUGCAGGAGCUUGAGUUgGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 39527 0.72 0.410471
Target:  5'- cGACGUCCUCGAGgaucucCUCGugauGgCCAGCGcGAu -3'
miRNA:   3'- -CUGCAGGAGCUU------GAGU----UgGGUCGC-CU- -5'
16489 3' -55 NC_004084.1 + 39635 0.68 0.627534
Target:  5'- gGAUGUucCCUCcaaccGGCUCGACCgCAGCGGu -3'
miRNA:   3'- -CUGCA--GGAGc----UUGAGUUGG-GUCGCCu -5'
16489 3' -55 NC_004084.1 + 40466 0.66 0.735576
Target:  5'- cGACGUCCacaucggccUCGAACgcgacgaccugaUCGACCUgcaGGUGGGa -3'
miRNA:   3'- -CUGCAGG---------AGCUUG------------AGUUGGG---UCGCCU- -5'
16489 3' -55 NC_004084.1 + 41019 0.66 0.763445
Target:  5'- aGAUcUCCUCGAucACUCuGCcggcgagauccucaCCGGCGGAa -3'
miRNA:   3'- -CUGcAGGAGCU--UGAGuUG--------------GGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 41307 0.67 0.68215
Target:  5'- cGACGUCCUgGAGCg-GACCgGcgagcGCGGGu -3'
miRNA:   3'- -CUGCAGGAgCUUGagUUGGgU-----CGCCU- -5'
16489 3' -55 NC_004084.1 + 42351 0.7 0.498853
Target:  5'- cGGCGgaaCUCGAGCgccaGGCCgAGCGGGa -3'
miRNA:   3'- -CUGCag-GAGCUUGag--UUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 43880 0.66 0.756304
Target:  5'- aGCGUCUUCGA--UCGAUCUGGcCGGGa -3'
miRNA:   3'- cUGCAGGAGCUugAGUUGGGUC-GCCU- -5'
16489 3' -55 NC_004084.1 + 44544 0.67 0.671279
Target:  5'- --gGUCCUCGGcuGCUgGugCCAGCGc- -3'
miRNA:   3'- cugCAGGAGCU--UGAgUugGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 46336 0.68 0.616583
Target:  5'- cAUGUCCUCGucGCUCG-CCCAacuGUGGGu -3'
miRNA:   3'- cUGCAGGAGCu-UGAGUuGGGU---CGCCU- -5'
16489 3' -55 NC_004084.1 + 46997 0.68 0.649438
Target:  5'- cGACGguguugugcuccUCCUCGuggcGCUCAGCgUGGUGGAa -3'
miRNA:   3'- -CUGC------------AGGAGCu---UGAGUUGgGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 48001 0.68 0.638489
Target:  5'- -uCGUCCUCGAccaUCAguccACCUcGCGGAg -3'
miRNA:   3'- cuGCAGGAGCUug-AGU----UGGGuCGCCU- -5'
16489 3' -55 NC_004084.1 + 50568 0.7 0.540792
Target:  5'- cAUGUCCguccaGAACUCGuCCCAgaGCGGAu -3'
miRNA:   3'- cUGCAGGag---CUUGAGUuGGGU--CGCCU- -5'
16489 3' -55 NC_004084.1 + 52718 1.09 0.001251
Target:  5'- cGACGUCCUCGAACUCAACCCAGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCUUGAGUUGGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 53283 0.66 0.756304
Target:  5'- cGACGUCCUggCGAccagccgcgaguACgUUGACCCGGCGa- -3'
miRNA:   3'- -CUGCAGGA--GCU------------UG-AGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 53454 0.66 0.756304
Target:  5'- cGAUcUCCUCGuGGgUCGucgucuCCCGGCGGAc -3'
miRNA:   3'- -CUGcAGGAGC-UUgAGUu-----GGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 54084 0.66 0.732429
Target:  5'- cGGCGUCgguggagaacgCUcCGGACUCGACgacgcccgcgaucaCCGGCGGGa -3'
miRNA:   3'- -CUGCAG-----------GA-GCUUGAGUUG--------------GGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 55562 0.69 0.562208
Target:  5'- uGACGUCUUCGAuggugucCUgCGAUCCAccGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCUu------GA-GUUGGGU--CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.