miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16489 3' -55 NC_004084.1 + 46336 0.68 0.616583
Target:  5'- cAUGUCCUCGucGCUCG-CCCAacuGUGGGu -3'
miRNA:   3'- cUGCAGGAGCu-UGAGUuGGGU---CGCCU- -5'
16489 3' -55 NC_004084.1 + 39635 0.68 0.627534
Target:  5'- gGAUGUucCCUCcaaccGGCUCGACCgCAGCGGu -3'
miRNA:   3'- -CUGCA--GGAGc----UUGAGUUGG-GUCGCCu -5'
16489 3' -55 NC_004084.1 + 41019 0.66 0.763445
Target:  5'- aGAUcUCCUCGAucACUCuGCcggcgagauccucaCCGGCGGAa -3'
miRNA:   3'- -CUGcAGGAGCU--UGAGuUG--------------GGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 43880 0.66 0.756304
Target:  5'- aGCGUCUUCGA--UCGAUCUGGcCGGGa -3'
miRNA:   3'- cUGCAGGAGCUugAGUUGGGUC-GCCU- -5'
16489 3' -55 NC_004084.1 + 11413 0.66 0.756304
Target:  5'- cGACGUCCUCGAGg--AACUC-GCGGu -3'
miRNA:   3'- -CUGCAGGAGCUUgagUUGGGuCGCCu -5'
16489 3' -55 NC_004084.1 + 10856 0.66 0.756304
Target:  5'- aACGUCCUCGAACggCGucuCCUccacuGGcCGGAu -3'
miRNA:   3'- cUGCAGGAGCUUGa-GUu--GGG-----UC-GCCU- -5'
16489 3' -55 NC_004084.1 + 54084 0.66 0.732429
Target:  5'- cGGCGUCgguggagaacgCUcCGGACUCGACgacgcccgcgaucaCCGGCGGGa -3'
miRNA:   3'- -CUGCAG-----------GA-GCUUGAGUUG--------------GGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 27155 0.67 0.703739
Target:  5'- cACGU--UCGAGCUCGACCgCGGUGaGAa -3'
miRNA:   3'- cUGCAggAGCUUGAGUUGG-GUCGC-CU- -5'
16489 3' -55 NC_004084.1 + 23688 0.67 0.697287
Target:  5'- --gGUCCgCGAGCUCAucgcgaaccggcgacGCCCGGaaaGGAc -3'
miRNA:   3'- cugCAGGaGCUUGAGU---------------UGGGUCg--CCU- -5'
16489 3' -55 NC_004084.1 + 9106 0.67 0.68215
Target:  5'- cGAUGUCgaCGAGCUCAcGCUCAGUGu- -3'
miRNA:   3'- -CUGCAGgaGCUUGAGU-UGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 41307 0.67 0.68215
Target:  5'- cGACGUCCUgGAGCg-GACCgGcgagcGCGGGu -3'
miRNA:   3'- -CUGCAGGAgCUUGagUUGGgU-----CGCCU- -5'
16489 3' -55 NC_004084.1 + 34830 0.67 0.68215
Target:  5'- cGCGUCCaucgCGAucuggcuCUCGACgaCAGCGGGg -3'
miRNA:   3'- cUGCAGGa---GCUu------GAGUUGg-GUCGCCU- -5'
16489 3' -55 NC_004084.1 + 1500 0.67 0.671279
Target:  5'- aGACGUcgcCCUCGAGCUCGAagCCGaugcacucGCGGu -3'
miRNA:   3'- -CUGCA---GGAGCUUGAGUUg-GGU--------CGCCu -5'
16489 3' -55 NC_004084.1 + 3929 0.68 0.660371
Target:  5'- aGGCGUCCUCGAAC-CGGCUUuugaaguGCaGGGu -3'
miRNA:   3'- -CUGCAGGAGCUUGaGUUGGGu------CG-CCU- -5'
16489 3' -55 NC_004084.1 + 46997 0.68 0.649438
Target:  5'- cGACGguguugugcuccUCCUCGuggcGCUCAGCgUGGUGGAa -3'
miRNA:   3'- -CUGC------------AGGAGCu---UGAGUUGgGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 48001 0.68 0.638489
Target:  5'- -uCGUCCUCGAccaUCAguccACCUcGCGGAg -3'
miRNA:   3'- cuGCAGGAGCUug-AGU----UGGGuCGCCU- -5'
16489 3' -55 NC_004084.1 + 16037 0.68 0.631916
Target:  5'- gGGCcUCCUCGAggaugcguugcucccGCUCGGCCUGGCGc- -3'
miRNA:   3'- -CUGcAGGAGCU---------------UGAGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 35678 0.68 0.627534
Target:  5'- cGAUGUCCUCGuAC-C-GCUgGGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCuUGaGuUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 36885 0.65 0.776529
Target:  5'- gGGCcUCCUCaAGCUCGgcgaACUCGGCGGc -3'
miRNA:   3'- -CUGcAGGAGcUUGAGU----UGGGUCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.