miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16489 3' -55 NC_004084.1 + 3929 0.68 0.660371
Target:  5'- aGGCGUCCUCGAAC-CGGCUUuugaaguGCaGGGu -3'
miRNA:   3'- -CUGCAGGAGCUUGaGUUGGGu------CG-CCU- -5'
16489 3' -55 NC_004084.1 + 46997 0.68 0.649438
Target:  5'- cGACGguguugugcuccUCCUCGuggcGCUCAGCgUGGUGGAa -3'
miRNA:   3'- -CUGC------------AGGAGCu---UGAGUUGgGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 25166 0.68 0.649438
Target:  5'- cGACGUCCUCGAcgucCUCAucgaACUCguAGgGGAc -3'
miRNA:   3'- -CUGCAGGAGCUu---GAGU----UGGG--UCgCCU- -5'
16489 3' -55 NC_004084.1 + 48001 0.68 0.638489
Target:  5'- -uCGUCCUCGAccaUCAguccACCUcGCGGAg -3'
miRNA:   3'- cuGCAGGAGCUug-AGU----UGGGuCGCCU- -5'
16489 3' -55 NC_004084.1 + 16037 0.68 0.631916
Target:  5'- gGGCcUCCUCGAggaugcguugcucccGCUCGGCCUGGCGc- -3'
miRNA:   3'- -CUGcAGGAGCU---------------UGAGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 39635 0.68 0.627534
Target:  5'- gGAUGUucCCUCcaaccGGCUCGACCgCAGCGGu -3'
miRNA:   3'- -CUGCA--GGAGc----UUGAGUUGG-GUCGCCu -5'
16489 3' -55 NC_004084.1 + 35678 0.68 0.627534
Target:  5'- cGAUGUCCUCGuAC-C-GCUgGGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCuUGaGuUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 26814 0.68 0.616583
Target:  5'- cGGCGUCCauuacaaGAGCUUGAaCCGGUGGAa -3'
miRNA:   3'- -CUGCAGGag-----CUUGAGUUgGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 46336 0.68 0.616583
Target:  5'- cAUGUCCUCGucGCUCG-CCCAacuGUGGGu -3'
miRNA:   3'- cUGCAGGAGCu-UGAGUuGGGU---CGCCU- -5'
16489 3' -55 NC_004084.1 + 10433 0.68 0.615489
Target:  5'- cGACGUCCUCGug--CAuCCCgcagaaguacucgAGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCuugaGUuGGG-------------UCGCCU- -5'
16489 3' -55 NC_004084.1 + 22151 0.69 0.573004
Target:  5'- -cCGUCCUUGAGg-UAGCCCagcuGGCGGAg -3'
miRNA:   3'- cuGCAGGAGCUUgaGUUGGG----UCGCCU- -5'
16489 3' -55 NC_004084.1 + 36255 0.69 0.571922
Target:  5'- cGACGUCCUCGAgugcgccgaggcGCUCGcgGucagucaucgcuuCCCAGcCGGGg -3'
miRNA:   3'- -CUGCAGGAGCU------------UGAGU--U-------------GGGUC-GCCU- -5'
16489 3' -55 NC_004084.1 + 55562 0.69 0.562208
Target:  5'- uGACGUCUUCGAuggugucCUgCGAUCCAccGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCUu------GA-GUUGGGU--CGCCU- -5'
16489 3' -55 NC_004084.1 + 12375 0.69 0.551468
Target:  5'- uGACGUCuccuugCUCGAACUCGugUucgaacucgUAGCGGAu -3'
miRNA:   3'- -CUGCAG------GAGCUUGAGUugG---------GUCGCCU- -5'
16489 3' -55 NC_004084.1 + 50568 0.7 0.540792
Target:  5'- cAUGUCCguccaGAACUCGuCCCAgaGCGGAu -3'
miRNA:   3'- cUGCAGGag---CUUGAGUuGGGU--CGCCU- -5'
16489 3' -55 NC_004084.1 + 9845 0.7 0.539728
Target:  5'- cGAgGUCggCGAgggcgGCUCAcgcgggaGCCCGGCGGAa -3'
miRNA:   3'- -CUgCAGgaGCU-----UGAGU-------UGGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 19969 0.7 0.519656
Target:  5'- cGCGaUCCUCGAggccgcagggGC-CGACCCAGCGa- -3'
miRNA:   3'- cUGC-AGGAGCU----------UGaGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 30774 0.7 0.519656
Target:  5'- cGACcUCCUCGAgGCguacgCGAUCCAGCGcGAg -3'
miRNA:   3'- -CUGcAGGAGCU-UGa----GUUGGGUCGC-CU- -5'
16489 3' -55 NC_004084.1 + 2216 0.7 0.50921
Target:  5'- cGAUGUCCUCGccGCUCGcuucgGCCagcGCGGAg -3'
miRNA:   3'- -CUGCAGGAGCu-UGAGU-----UGGgu-CGCCU- -5'
16489 3' -55 NC_004084.1 + 6471 0.7 0.50921
Target:  5'- gGAUGUCCUgGAcCUC-GCCCGGCuGAg -3'
miRNA:   3'- -CUGCAGGAgCUuGAGuUGGGUCGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.