miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16489 5' -56.8 NC_004084.1 + 38591 0.66 0.694358
Target:  5'- aCUCCaGCUGGGuACU-CGAgaccgucGCGGAa- -3'
miRNA:   3'- gGAGG-CGACCC-UGAuGCUa------CGCCUga -5'
16489 5' -56.8 NC_004084.1 + 51667 0.66 0.694358
Target:  5'- cCUUCCGC-GGGACuUACGccGUcaucGGACUc -3'
miRNA:   3'- -GGAGGCGaCCCUG-AUGCuaCG----CCUGA- -5'
16489 5' -56.8 NC_004084.1 + 49401 0.66 0.662322
Target:  5'- cUCUCCGa--GGACUACGcgGUGGuCa -3'
miRNA:   3'- -GGAGGCgacCCUGAUGCuaCGCCuGa -5'
16489 5' -56.8 NC_004084.1 + 55829 0.66 0.651576
Target:  5'- aCCUCgGCgucguccGGGAUgccgucaACGAcGCGGACg -3'
miRNA:   3'- -GGAGgCGa------CCCUGa------UGCUaCGCCUGa -5'
16489 5' -56.8 NC_004084.1 + 19107 0.67 0.630042
Target:  5'- --aCCGC-GGcGGCUACcGUGUGGACUc -3'
miRNA:   3'- ggaGGCGaCC-CUGAUGcUACGCCUGA- -5'
16489 5' -56.8 NC_004084.1 + 47159 0.67 0.619274
Target:  5'- aCCUCCuGCUcuacGGcGACUGgGAUGCuGACc -3'
miRNA:   3'- -GGAGG-CGA----CC-CUGAUgCUACGcCUGa -5'
16489 5' -56.8 NC_004084.1 + 30457 0.68 0.565761
Target:  5'- --cCCGCUGGGGacguuccuCUACGAggcgcUGCcGGACUc -3'
miRNA:   3'- ggaGGCGACCCU--------GAUGCU-----ACG-CCUGA- -5'
16489 5' -56.8 NC_004084.1 + 43894 0.69 0.46336
Target:  5'- -aUCUgGCcGGGACUACG-UGUGGACg -3'
miRNA:   3'- ggAGG-CGaCCCUGAUGCuACGCCUGa -5'
16489 5' -56.8 NC_004084.1 + 47809 0.71 0.380125
Target:  5'- aCUCgGCUGGcGACUACuGUG-GGACUc -3'
miRNA:   3'- gGAGgCGACC-CUGAUGcUACgCCUGA- -5'
16489 5' -56.8 NC_004084.1 + 56718 0.74 0.252273
Target:  5'- uCCUCCGCUGGGACU------CGGACg -3'
miRNA:   3'- -GGAGGCGACCCUGAugcuacGCCUGa -5'
16489 5' -56.8 NC_004084.1 + 52753 1.09 0.000832
Target:  5'- aCCUCCGCUGGGACUACGAUGCGGACUu -3'
miRNA:   3'- -GGAGGCGACCCUGAUGCUACGCCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.