miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1649 5' -59.2 NC_001347.2 + 37059 0.66 0.876384
Target:  5'- -gCCGCGGAgGUGCugGCGgccguggccugugGCCCGAa -3'
miRNA:   3'- aaGGCGCUUgCACG--CGCaga----------CGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 88213 0.66 0.868704
Target:  5'- -aCCGCGGACGc-CGCucacgCUGUCCGAg -3'
miRNA:   3'- aaGGCGCUUGCacGCGca---GACGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 156003 0.66 0.861518
Target:  5'- gUCCcaGCGAGC-UGCGCGUCa--CCGAu -3'
miRNA:   3'- aAGG--CGCUUGcACGCGCAGacgGGCU- -5'
1649 5' -59.2 NC_001347.2 + 150330 0.66 0.861518
Target:  5'- -gCUGCuGGACGaGUGCGcCUGCCgCGAu -3'
miRNA:   3'- aaGGCG-CUUGCaCGCGCaGACGG-GCU- -5'
1649 5' -59.2 NC_001347.2 + 2399 0.66 0.854142
Target:  5'- -gCCGCcGAgGccGCGCGgcggcugCUGCCCGAg -3'
miRNA:   3'- aaGGCGcUUgCa-CGCGCa------GACGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 200472 0.66 0.854142
Target:  5'- cUUCGUGAACGaggGCGUGUUgucGCCgGAu -3'
miRNA:   3'- aAGGCGCUUGCa--CGCGCAGa--CGGgCU- -5'
1649 5' -59.2 NC_001347.2 + 1903 0.66 0.853394
Target:  5'- -gCUGCGGcuggcugGCGcuggGCGCGgugCUGCCCGc -3'
miRNA:   3'- aaGGCGCU-------UGCa---CGCGCa--GACGGGCu -5'
1649 5' -59.2 NC_001347.2 + 165456 0.66 0.841962
Target:  5'- --aCGCGGuuugGCGUGCGCGUacCgcagaaagucgaagaUGCCCGGa -3'
miRNA:   3'- aagGCGCU----UGCACGCGCA--G---------------ACGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 160804 0.66 0.838846
Target:  5'- cUCCGCGGG-GUGCGUGUggcucugaugCUGCgUGAg -3'
miRNA:   3'- aAGGCGCUUgCACGCGCA----------GACGgGCU- -5'
1649 5' -59.2 NC_001347.2 + 118859 0.67 0.828532
Target:  5'- cUCCGCaGAGCGUuccccgucgaaucaGCGuCGUCcccacGCCCGGa -3'
miRNA:   3'- aAGGCG-CUUGCA--------------CGC-GCAGa----CGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 79050 0.67 0.822863
Target:  5'- -gCCGCGAGaagGCGCGUCgGCgCCa- -3'
miRNA:   3'- aaGGCGCUUgcaCGCGCAGaCG-GGcu -5'
1649 5' -59.2 NC_001347.2 + 228947 0.67 0.819588
Target:  5'- aUCUGUGuGCGguguucuucgucgGCGUGUUUGUCCGAg -3'
miRNA:   3'- aAGGCGCuUGCa------------CGCGCAGACGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 130051 0.67 0.81463
Target:  5'- gUCUGCGAuc-UGCagaaGCGUCcGCCCGAg -3'
miRNA:   3'- aAGGCGCUugcACG----CGCAGaCGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 52587 0.67 0.797718
Target:  5'- -aCUGgGAcGCGUGCucucGCGcgCUGCCCGAc -3'
miRNA:   3'- aaGGCgCU-UGCACG----CGCa-GACGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 229619 0.67 0.796857
Target:  5'- -gUCGCGGGCGUGUGCcggguguGUCgUGCCgGGu -3'
miRNA:   3'- aaGGCGCUUGCACGCG-------CAG-ACGGgCU- -5'
1649 5' -59.2 NC_001347.2 + 140 0.67 0.796857
Target:  5'- -gUCGCGGGCGUGUGCcggguguGUCgUGCCgGGu -3'
miRNA:   3'- aaGGCGCUUGCACGCG-------CAG-ACGGgCU- -5'
1649 5' -59.2 NC_001347.2 + 138689 0.67 0.789053
Target:  5'- uUUUCGCGGGCGgGUGCGUCgGCUagCGGu -3'
miRNA:   3'- -AAGGCGCUUGCaCGCGCAGaCGG--GCU- -5'
1649 5' -59.2 NC_001347.2 + 189857 0.68 0.780259
Target:  5'- -cCCGUGAGCGguaGCGCGccgggucgcCUGUCCGGc -3'
miRNA:   3'- aaGGCGCUUGCa--CGCGCa--------GACGGGCU- -5'
1649 5' -59.2 NC_001347.2 + 101664 0.69 0.724279
Target:  5'- -aUCGCGAcuAUGUGCucaaguuccucacGCGUCUGgCCGAa -3'
miRNA:   3'- aaGGCGCU--UGCACG-------------CGCAGACgGGCU- -5'
1649 5' -59.2 NC_001347.2 + 116787 0.7 0.667547
Target:  5'- -aCCGCGGgguCGcGCGCGUaccacgGCCCGAu -3'
miRNA:   3'- aaGGCGCUu--GCaCGCGCAga----CGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.