miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16490 5' -58.8 NC_004084.1 + 20962 0.67 0.505473
Target:  5'- cGUCGGGgucgGGAU-GCGGACUcUUCGCg -3'
miRNA:   3'- -CGGCUCa---CCUAcCGCCUGGuAGGCGa -5'
16490 5' -58.8 NC_004084.1 + 44043 0.67 0.485431
Target:  5'- cGCCGAGUGGGaGGUGcGCgAagaugCCGCg -3'
miRNA:   3'- -CGGCUCACCUaCCGCcUGgUa----GGCGa -5'
16490 5' -58.8 NC_004084.1 + 29154 0.67 0.475553
Target:  5'- uGCUGGuGUGGucgcGCGGGCCGUUCGUc -3'
miRNA:   3'- -CGGCU-CACCuac-CGCCUGGUAGGCGa -5'
16490 5' -58.8 NC_004084.1 + 43817 0.68 0.456105
Target:  5'- cGCCGGGagaUGGAUcauucgugGGCGcGAgaCAUCCGCg -3'
miRNA:   3'- -CGGCUC---ACCUA--------CCGC-CUg-GUAGGCGa -5'
16490 5' -58.8 NC_004084.1 + 102 0.68 0.454183
Target:  5'- uGCCGucucgauGGUGGAugUGGaCGGAggagaccUCGUCCGCa -3'
miRNA:   3'- -CGGC-------UCACCU--ACC-GCCU-------GGUAGGCGa -5'
16490 5' -58.8 NC_004084.1 + 50064 0.68 0.431478
Target:  5'- aCCGGGUGGcgauUgcucucgaaaacgccGGCuGGAUCAUCCGCg -3'
miRNA:   3'- cGGCUCACCu---A---------------CCG-CCUGGUAGGCGa -5'
16490 5' -58.8 NC_004084.1 + 6045 0.68 0.40945
Target:  5'- uUCGAGUGGAUucgauaccaGGuCGGuuCCGUCCGUg -3'
miRNA:   3'- cGGCUCACCUA---------CC-GCCu-GGUAGGCGa -5'
16490 5' -58.8 NC_004084.1 + 2782 0.69 0.391638
Target:  5'- cGCCGA-UGGGUGaGaCGGACCcgCCGa- -3'
miRNA:   3'- -CGGCUcACCUAC-C-GCCUGGuaGGCga -5'
16490 5' -58.8 NC_004084.1 + 5518 0.69 0.357565
Target:  5'- uCCuAGUGGGUGGCGaggaacucGACCAUCCagGCg -3'
miRNA:   3'- cGGcUCACCUACCGC--------CUGGUAGG--CGa -5'
16490 5' -58.8 NC_004084.1 + 18613 0.71 0.295853
Target:  5'- aGCCgGAGaUGGAUGGagGcGACC-UCCGCUa -3'
miRNA:   3'- -CGG-CUC-ACCUACCg-C-CUGGuAGGCGA- -5'
16490 5' -58.8 NC_004084.1 + 2539 0.72 0.236699
Target:  5'- cGCaCGGGUGGccGcuGCGGACCucuUCCGCg -3'
miRNA:   3'- -CG-GCUCACCuaC--CGCCUGGu--AGGCGa -5'
16490 5' -58.8 NC_004084.1 + 2949 0.76 0.140256
Target:  5'- aGCCGGGaUGGAuccggcccUGGCGGAUCAUCUGg- -3'
miRNA:   3'- -CGGCUC-ACCU--------ACCGCCUGGUAGGCga -5'
16490 5' -58.8 NC_004084.1 + 53123 1.1 0.000441
Target:  5'- cGCCGAGUGGAUGGCGGACCAUCCGCUg -3'
miRNA:   3'- -CGGCUCACCUACCGCCUGGUAGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.