miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16491 3' -54.4 NC_004084.1 + 51408 0.66 0.82683
Target:  5'- gCCGACgCCgUCGAGG-CCU--UCGAGGg -3'
miRNA:   3'- -GGUUGaGG-AGCUCCuGGAgcAGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 9250 0.66 0.82683
Target:  5'- uCCAGCgUCUCGGGGuCgUCGuUCGuGAa -3'
miRNA:   3'- -GGUUGaGGAGCUCCuGgAGC-AGCuCU- -5'
16491 3' -54.4 NC_004084.1 + 647 0.66 0.82683
Target:  5'- -gAGCUCCUCGAcGGCgUCGUgGuAGGu -3'
miRNA:   3'- ggUUGAGGAGCUcCUGgAGCAgC-UCU- -5'
16491 3' -54.4 NC_004084.1 + 35145 0.66 0.821423
Target:  5'- uCgAGgUCCUCgggguacaucccaaaGAGGACCUUGUCGucGAc -3'
miRNA:   3'- -GgUUgAGGAG---------------CUCCUGGAGCAGCu-CU- -5'
16491 3' -54.4 NC_004084.1 + 17569 0.66 0.817779
Target:  5'- cUCGACggCCaguUCGGGGACCUCGaccUCcGGAa -3'
miRNA:   3'- -GGUUGa-GG---AGCUCCUGGAGC---AGcUCU- -5'
16491 3' -54.4 NC_004084.1 + 21468 0.66 0.817779
Target:  5'- aCCGGCUcgcCCUCGAGGgcggcgaucGCCUCGguugcgUCGuAGGc -3'
miRNA:   3'- -GGUUGA---GGAGCUCC---------UGGAGC------AGC-UCU- -5'
16491 3' -54.4 NC_004084.1 + 49736 0.66 0.808538
Target:  5'- gUCucCUCUUCGAGGugCUCGagUGGGu -3'
miRNA:   3'- -GGuuGAGGAGCUCCugGAGCa-GCUCu -5'
16491 3' -54.4 NC_004084.1 + 17174 0.66 0.799117
Target:  5'- cCCGAUUCCgUCGGGGuuCUCGU--AGAc -3'
miRNA:   3'- -GGUUGAGG-AGCUCCugGAGCAgcUCU- -5'
16491 3' -54.4 NC_004084.1 + 21856 0.66 0.799117
Target:  5'- aCUGACcguaCCUCGAGGACUgcgucauccgcaUCG-CGAGGa -3'
miRNA:   3'- -GGUUGa---GGAGCUCCUGG------------AGCaGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 36223 0.66 0.799117
Target:  5'- uCCGGuCUCCUCGAGGGCaacCGgUGGGc -3'
miRNA:   3'- -GGUU-GAGGAGCUCCUGga-GCaGCUCu -5'
16491 3' -54.4 NC_004084.1 + 8217 0.66 0.799117
Target:  5'- aCGGCUUCaUCacgguugcaGAGGGCgaCGUCGAGAc -3'
miRNA:   3'- gGUUGAGG-AG---------CUCCUGgaGCAGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 44862 0.66 0.789527
Target:  5'- gCGACUuCCagGAGGACgUCGcUGAGGa -3'
miRNA:   3'- gGUUGA-GGagCUCCUGgAGCaGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 16014 0.66 0.789527
Target:  5'- gCCAcCUCCgcccgugacugCGcGGGCCUCcUCGAGGa -3'
miRNA:   3'- -GGUuGAGGa----------GCuCCUGGAGcAGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 49868 0.67 0.779778
Target:  5'- uCgGACUCggUGAGGACgUCGaucUCGAGGu -3'
miRNA:   3'- -GgUUGAGgaGCUCCUGgAGC---AGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 48488 0.67 0.779778
Target:  5'- gCAACUCgCU-GAGG--CUCGUCGAGGc -3'
miRNA:   3'- gGUUGAG-GAgCUCCugGAGCAGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 37002 0.67 0.779778
Target:  5'- aCGACUCaUCGAuGGAuaCCUCaUCGAGGc -3'
miRNA:   3'- gGUUGAGgAGCU-CCU--GGAGcAGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 8780 0.67 0.76988
Target:  5'- gCCGACUCCaucUCGAcGGAgCCcggCGaCGAGAu -3'
miRNA:   3'- -GGUUGAGG---AGCU-CCU-GGa--GCaGCUCU- -5'
16491 3' -54.4 NC_004084.1 + 40006 0.67 0.759844
Target:  5'- gCCAGCUCgUCGAGGAgugcaaagucaaCCUCaaCGaAGAc -3'
miRNA:   3'- -GGUUGAGgAGCUCCU------------GGAGcaGC-UCU- -5'
16491 3' -54.4 NC_004084.1 + 1643 0.67 0.759844
Target:  5'- aCCGGCUUCUgcgUGGGGugCUCGuuccccgacgUCGAGu -3'
miRNA:   3'- -GGUUGAGGA---GCUCCugGAGC----------AGCUCu -5'
16491 3' -54.4 NC_004084.1 + 7320 0.67 0.749681
Target:  5'- uCCucucGCUgCUCGAGGACUUCGaUCGc-- -3'
miRNA:   3'- -GGu---UGAgGAGCUCCUGGAGC-AGCucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.