miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16491 5' -60.4 NC_004084.1 + 19423 0.66 0.491754
Target:  5'- aUCCCCGUCGAUCggggUgUUGaaGGGUUGg -3'
miRNA:   3'- cAGGGGCGGCUAGa---GgAGCa-CCCAGC- -5'
16491 5' -60.4 NC_004084.1 + 46488 0.66 0.472305
Target:  5'- aGUCCUCGCUGGUCgcgaCgUCGccGGUCGc -3'
miRNA:   3'- -CAGGGGCGGCUAGa---GgAGCacCCAGC- -5'
16491 5' -60.4 NC_004084.1 + 16611 0.66 0.462728
Target:  5'- --aCCCGgCGggCUCCUCGa-GGUCGa -3'
miRNA:   3'- cagGGGCgGCuaGAGGAGCacCCAGC- -5'
16491 5' -60.4 NC_004084.1 + 51642 0.67 0.44762
Target:  5'- cGUCCCCGCCGAga-CCUCGgacugcccuuccgcGGGa-- -3'
miRNA:   3'- -CAGGGGCGGCUagaGGAGCa-------------CCCagc -5'
16491 5' -60.4 NC_004084.1 + 43207 0.67 0.442955
Target:  5'- -gCCCggugagaCGCCGAUCUCCUgGUGcGaGUCc -3'
miRNA:   3'- caGGG-------GCGGCUAGAGGAgCAC-C-CAGc -5'
16491 5' -60.4 NC_004084.1 + 28696 0.67 0.434627
Target:  5'- gGUCgCCCGgaCGAUCUCCUCGaacggccgcgcGGGuUCGg -3'
miRNA:   3'- -CAG-GGGCg-GCUAGAGGAGCa----------CCC-AGC- -5'
16491 5' -60.4 NC_004084.1 + 49720 0.67 0.422761
Target:  5'- cGUUCaCCGUuacgaGGUCUCCUCuucgaggugcucgaGUGGGUCGc -3'
miRNA:   3'- -CAGG-GGCGg----CUAGAGGAG--------------CACCCAGC- -5'
16491 5' -60.4 NC_004084.1 + 36654 0.67 0.416453
Target:  5'- cGUCgaugCCGCCGAUCcccguggaaccgUCCaggguUCGUGGGUCc -3'
miRNA:   3'- -CAGg---GGCGGCUAG------------AGG-----AGCACCCAGc -5'
16491 5' -60.4 NC_004084.1 + 36218 0.68 0.390081
Target:  5'- -aCCUCuCCGGUCUCCUCGaGGG-Ca -3'
miRNA:   3'- caGGGGcGGCUAGAGGAGCaCCCaGc -5'
16491 5' -60.4 NC_004084.1 + 38402 0.68 0.373117
Target:  5'- cGUCCUcgagCGCCGAUCggauUCCccguucgaugaUCGcUGGGUCGg -3'
miRNA:   3'- -CAGGG----GCGGCUAG----AGG-----------AGC-ACCCAGC- -5'
16491 5' -60.4 NC_004084.1 + 35421 0.69 0.340723
Target:  5'- aUCgUCGUCGAUCUCgCUCGcGaGGUCGa -3'
miRNA:   3'- cAGgGGCGGCUAGAG-GAGCaC-CCAGC- -5'
16491 5' -60.4 NC_004084.1 + 39530 0.69 0.310414
Target:  5'- cGUCCUCGagGAUCUCCUCGUGauGGcCa -3'
miRNA:   3'- -CAGGGGCggCUAGAGGAGCAC--CCaGc -5'
16491 5' -60.4 NC_004084.1 + 58197 0.7 0.275472
Target:  5'- aUCgCUCGCCGGUCgaCUUCGcUGGGUCa -3'
miRNA:   3'- cAG-GGGCGGCUAGa-GGAGC-ACCCAGc -5'
16491 5' -60.4 NC_004084.1 + 53445 1.07 0.000539
Target:  5'- gGUCCCCGCCGAUCUCCUCGUGGGUCGu -3'
miRNA:   3'- -CAGGGGCGGCUAGAGGAGCACCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.