miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16492 3' -46.8 NC_004084.1 + 7736 0.66 0.99204
Target:  5'- uUCGCCUCGCUgg--CGAGCugCUGAa -3'
miRNA:   3'- gAGCGGAGUGGaauaGUUUGuaGAUU- -5'
16492 3' -46.8 NC_004084.1 + 35853 0.66 0.99204
Target:  5'- aUCgGCCgaaCGCCgaGUCGAACAUCg-- -3'
miRNA:   3'- gAG-CGGa--GUGGaaUAGUUUGUAGauu -5'
16492 3' -46.8 NC_004084.1 + 14924 0.66 0.99204
Target:  5'- uUCGCCUCgAUCUgGUCGAAgAUCc-- -3'
miRNA:   3'- gAGCGGAG-UGGAaUAGUUUgUAGauu -5'
16492 3' -46.8 NC_004084.1 + 13378 0.66 0.990723
Target:  5'- gUUGCUUCGCCUUuuccgCAAGCucUCUAu -3'
miRNA:   3'- gAGCGGAGUGGAAua---GUUUGu-AGAUu -5'
16492 3' -46.8 NC_004084.1 + 55244 0.66 0.990723
Target:  5'- -aCGuCCUCGCC--GUCGacGACGUCUAc -3'
miRNA:   3'- gaGC-GGAGUGGaaUAGU--UUGUAGAUu -5'
16492 3' -46.8 NC_004084.1 + 20764 0.67 0.978885
Target:  5'- aUCGUgaaUagACCUUAUCAAACAUCa-- -3'
miRNA:   3'- gAGCG---GagUGGAAUAGUUUGUAGauu -5'
16492 3' -46.8 NC_004084.1 + 22227 0.68 0.969876
Target:  5'- -cCGCCUCGCC--GUCGAACGcuUCa-- -3'
miRNA:   3'- gaGCGGAGUGGaaUAGUUUGU--AGauu -5'
16492 3' -46.8 NC_004084.1 + 46050 0.68 0.962122
Target:  5'- cCUCGCCUuccgcuucgucgcCACCU--UCGAACGUCc-- -3'
miRNA:   3'- -GAGCGGA-------------GUGGAauAGUUUGUAGauu -5'
16492 3' -46.8 NC_004084.1 + 33535 0.7 0.927276
Target:  5'- gUCGUUUUcuggcaugACCUUAUCAAACGUUUAGa -3'
miRNA:   3'- gAGCGGAG--------UGGAAUAGUUUGUAGAUU- -5'
16492 3' -46.8 NC_004084.1 + 49854 0.73 0.769595
Target:  5'- gCUCG-CUCACCUUGUCGGAC-UCg-- -3'
miRNA:   3'- -GAGCgGAGUGGAAUAGUUUGuAGauu -5'
16492 3' -46.8 NC_004084.1 + 9532 0.74 0.72486
Target:  5'- aUCGCCUCGCC--GUCGuGCAUCg-- -3'
miRNA:   3'- gAGCGGAGUGGaaUAGUuUGUAGauu -5'
16492 3' -46.8 NC_004084.1 + 26611 0.75 0.713374
Target:  5'- gCUCGgCagACCUUAUCAAACAcUCUAAu -3'
miRNA:   3'- -GAGCgGagUGGAAUAGUUUGU-AGAUU- -5'
16492 3' -46.8 NC_004084.1 + 31763 0.75 0.690136
Target:  5'- uCUCGCUggaGUCUUAUCAAACAUCUGGg -3'
miRNA:   3'- -GAGCGGag-UGGAAUAGUUUGUAGAUU- -5'
16492 3' -46.8 NC_004084.1 + 53536 1.07 0.009918
Target:  5'- uCUCGCCUCACCUUAUCAAACAUCUAAc -3'
miRNA:   3'- -GAGCGGAGUGGAAUAGUUUGUAGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.