miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16493 5' -53.1 NC_004084.1 + 42729 0.66 0.838227
Target:  5'- cACCGAUCGCGAGcaggcgaaggaCAUcgGCCCGGAg -3'
miRNA:   3'- -UGGCUGGUGUUCaag--------GUGa-UGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 22149 0.66 0.827348
Target:  5'- gACUGACCGCGAGcgCCucggcgcacucgaggACgucgACCCGGu -3'
miRNA:   3'- -UGGCUGGUGUUCaaGG---------------UGa---UGGGUCu -5'
16493 5' -53.1 NC_004084.1 + 1428 0.66 0.823653
Target:  5'- --gGGCUACGAGUUCgACgagUACCCGGc -3'
miRNA:   3'- uggCUGGUGUUCAAGgUG---AUGGGUCu -5'
16493 5' -53.1 NC_004084.1 + 20976 0.66 0.823653
Target:  5'- uGCgGACUcuucGCGAGUgccgCCGCUAUCgAGAu -3'
miRNA:   3'- -UGgCUGG----UGUUCAa---GGUGAUGGgUCU- -5'
16493 5' -53.1 NC_004084.1 + 3622 0.66 0.823653
Target:  5'- gACCGACUACGAGgcgaUCgGCUgGCUCAcGAu -3'
miRNA:   3'- -UGGCUGGUGUUCa---AGgUGA-UGGGU-CU- -5'
16493 5' -53.1 NC_004084.1 + 2588 0.67 0.804697
Target:  5'- cAUCGACCugGAGUUCC----UCCGGGu -3'
miRNA:   3'- -UGGCUGGugUUCAAGGugauGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 48973 0.67 0.794936
Target:  5'- cGCCGACUACGGcGUcCCGCagcACCgAGAg -3'
miRNA:   3'- -UGGCUGGUGUU-CAaGGUGa--UGGgUCU- -5'
16493 5' -53.1 NC_004084.1 + 41758 0.67 0.784999
Target:  5'- cGCCGGCgACGAGgaCCu---CCCGGAc -3'
miRNA:   3'- -UGGCUGgUGUUCaaGGugauGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 47732 0.67 0.782992
Target:  5'- cACCGGCUACccgaacggUCGCUGCCCGGc -3'
miRNA:   3'- -UGGCUGGUGuucaa---GGUGAUGGGUCu -5'
16493 5' -53.1 NC_004084.1 + 40280 0.68 0.743739
Target:  5'- cGCCGGCgACGucGUUCCAgUccAUCCGGAu -3'
miRNA:   3'- -UGGCUGgUGUu-CAAGGUgA--UGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 52176 0.68 0.733104
Target:  5'- gUCGACCGCGucGGgaucgaCGCUAUCCGGAa -3'
miRNA:   3'- uGGCUGGUGU--UCaag---GUGAUGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 57460 0.68 0.733104
Target:  5'- cACCGACCGCGAGauggcCCGCgACCUccuccgGGAg -3'
miRNA:   3'- -UGGCUGGUGUUCaa---GGUGaUGGG------UCU- -5'
16493 5' -53.1 NC_004084.1 + 10717 0.68 0.711535
Target:  5'- cGCgGAgcaCCACGAGUUCgGCgcUCCAGAg -3'
miRNA:   3'- -UGgCU---GGUGUUCAAGgUGauGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 43603 0.68 0.700624
Target:  5'- --gGAUCGCGAGUacggCCGCUGgCCGGAc -3'
miRNA:   3'- uggCUGGUGUUCAa---GGUGAUgGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 30627 0.69 0.655299
Target:  5'- cGCCGACUACGAGUUCgcgacgaCGCUGCUgAa- -3'
miRNA:   3'- -UGGCUGGUGUUCAAG-------GUGAUGGgUcu -5'
16493 5' -53.1 NC_004084.1 + 29235 0.69 0.645274
Target:  5'- cGCCGAgCaggGCGAGUUCCGCUggacgaacgGCCCGc- -3'
miRNA:   3'- -UGGCUgG---UGUUCAAGGUGA---------UGGGUcu -5'
16493 5' -53.1 NC_004084.1 + 56898 0.69 0.645274
Target:  5'- gACCGACCGCGAGUgcaUCgGCUucgaGCUCgAGGg -3'
miRNA:   3'- -UGGCUGGUGUUCA---AGgUGA----UGGG-UCU- -5'
16493 5' -53.1 NC_004084.1 + 52164 0.7 0.62297
Target:  5'- cGCCGACCACGucgacGaaCCGCUcgaucACCUAGAc -3'
miRNA:   3'- -UGGCUGGUGUu----CaaGGUGA-----UGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 9867 0.71 0.524073
Target:  5'- cUCGACCGCGacgaGGUUCUugaaccCUGCCCGGGa -3'
miRNA:   3'- uGGCUGGUGU----UCAAGGu-----GAUGGGUCU- -5'
16493 5' -53.1 NC_004084.1 + 54227 1.09 0.001889
Target:  5'- cACCGACCACAAGUUCCACUACCCAGAc -3'
miRNA:   3'- -UGGCUGGUGUUCAAGGUGAUGGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.