miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16494 5' -54.2 NC_004084.1 + 37873 0.66 0.818329
Target:  5'- gGCCGggCgGguGUCGGauCGCCUCGUaGUCa -3'
miRNA:   3'- -CGGCaaGgU--CAGCU--GCGGAGUA-CAGa -5'
16494 5' -54.2 NC_004084.1 + 14646 0.66 0.799446
Target:  5'- cGCCGgcgagcgcCCAGUCGAUGCCcgCGagcGUCc -3'
miRNA:   3'- -CGGCaa------GGUCAGCUGCGGa-GUa--CAGa -5'
16494 5' -54.2 NC_004084.1 + 9455 0.66 0.799446
Target:  5'- cGCCGU---AGUCGGCGgCaUCGUGUUUg -3'
miRNA:   3'- -CGGCAaggUCAGCUGCgG-AGUACAGA- -5'
16494 5' -54.2 NC_004084.1 + 12870 0.66 0.789737
Target:  5'- aGCUacagagCguGUCGACGCCggaCGUGUCa -3'
miRNA:   3'- -CGGcaa---GguCAGCUGCGGa--GUACAGa -5'
16494 5' -54.2 NC_004084.1 + 34980 0.68 0.696345
Target:  5'- aCCGcUUCCA-UCGcCGCCUgCGUGUCa -3'
miRNA:   3'- cGGC-AAGGUcAGCuGCGGA-GUACAGa -5'
16494 5' -54.2 NC_004084.1 + 13739 0.68 0.685507
Target:  5'- cGUCGUcugUCCGGUCGGCucgcCCUCGagGUCg -3'
miRNA:   3'- -CGGCA---AGGUCAGCUGc---GGAGUa-CAGa -5'
16494 5' -54.2 NC_004084.1 + 57109 0.68 0.674619
Target:  5'- cGCCucgaUCCAGUCGAggaCGuCCUCgGUGUCg -3'
miRNA:   3'- -CGGca--AGGUCAGCU---GC-GGAG-UACAGa -5'
16494 5' -54.2 NC_004084.1 + 5810 0.68 0.66369
Target:  5'- cGCCGggCguGUCGACuGCCUCGa---- -3'
miRNA:   3'- -CGGCaaGguCAGCUG-CGGAGUacaga -5'
16494 5' -54.2 NC_004084.1 + 10412 0.69 0.608812
Target:  5'- gGUCGUcgaccaucUCgCAGUCGACGuCCUCGUG-Ca -3'
miRNA:   3'- -CGGCA--------AG-GUCAGCUGC-GGAGUACaGa -5'
16494 5' -54.2 NC_004084.1 + 54788 0.7 0.543695
Target:  5'- aUCGUgagCCAGcCGAuCGCCUCGUaGUCg -3'
miRNA:   3'- cGGCAa--GGUCaGCU-GCGGAGUA-CAGa -5'
16494 5' -54.2 NC_004084.1 + 13476 0.71 0.533038
Target:  5'- cGCCGUUCUcGUCGACGaaCgUCAUcGUCa -3'
miRNA:   3'- -CGGCAAGGuCAGCUGC--GgAGUA-CAGa -5'
16494 5' -54.2 NC_004084.1 + 8174 0.71 0.501548
Target:  5'- cCCGcUCCAG-CGACGCCUCAgagugggGUUc -3'
miRNA:   3'- cGGCaAGGUCaGCUGCGGAGUa------CAGa -5'
16494 5' -54.2 NC_004084.1 + 54399 1.11 0.001132
Target:  5'- cGCCGUUCCAGUCGACGCCUCAUGUCUa -3'
miRNA:   3'- -CGGCAAGGUCAGCUGCGGAGUACAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.