miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16495 3' -53.4 NC_004084.1 + 48970 0.66 0.831352
Target:  5'- uGCCGCcgacuacgGCGuCCCgcaGCAC--CGAGAGCg -3'
miRNA:   3'- -UGGCG--------CGCuGGGa--CGUGaaGUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 36461 0.66 0.81651
Target:  5'- uCCGCGUcguccgggagaucucGAUCCcGCACUUCAAccgggacuacugGGGCc -3'
miRNA:   3'- uGGCGCG---------------CUGGGaCGUGAAGUU------------UUCG- -5'
16495 3' -53.4 NC_004084.1 + 28901 0.66 0.812719
Target:  5'- gGCCGCGCGAUCgaG-GCUggcuGGAGCc -3'
miRNA:   3'- -UGGCGCGCUGGgaCgUGAagu-UUUCG- -5'
16495 3' -53.4 NC_004084.1 + 44639 0.66 0.803104
Target:  5'- aACCGgaCGCGaucuccgagcccGCCCaGCGCgaccUCGAGGGCg -3'
miRNA:   3'- -UGGC--GCGC------------UGGGaCGUGa---AGUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 29068 0.67 0.783335
Target:  5'- --gGCGuCGACCa-GCGCgagUUCGAGAGCg -3'
miRNA:   3'- uggCGC-GCUGGgaCGUG---AAGUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 8582 0.67 0.783335
Target:  5'- aGCgaGCGCGACCUccacgcccgGUACUUCAu--GCg -3'
miRNA:   3'- -UGg-CGCGCUGGGa--------CGUGAAGUuuuCG- -5'
16495 3' -53.4 NC_004084.1 + 16472 0.67 0.783335
Target:  5'- cGCaGuCGCGGCCCUGUccGCUgCAAGuGCg -3'
miRNA:   3'- -UGgC-GCGCUGGGACG--UGAaGUUUuCG- -5'
16495 3' -53.4 NC_004084.1 + 6971 0.67 0.759807
Target:  5'- aGCCGcCGCGGCCCUcccaacguagaucaGCgugucGCccUCGAAGGCc -3'
miRNA:   3'- -UGGC-GCGCUGGGA--------------CG-----UGa-AGUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 34800 0.67 0.731291
Target:  5'- cGCCuCGaCGGgCCUGaCGCUUCGAgcGCa -3'
miRNA:   3'- -UGGcGC-GCUgGGAC-GUGAAGUUuuCG- -5'
16495 3' -53.4 NC_004084.1 + 43673 0.68 0.709675
Target:  5'- uACCGCGCcgaGugCCUGCGa--CGGAcgGGCg -3'
miRNA:   3'- -UGGCGCG---CugGGACGUgaaGUUU--UCG- -5'
16495 3' -53.4 NC_004084.1 + 14357 0.68 0.676693
Target:  5'- gGCCGCGUGGCgaggaucaccaUCUGUACggCGGcGGCg -3'
miRNA:   3'- -UGGCGCGCUG-----------GGACGUGaaGUUuUCG- -5'
16495 3' -53.4 NC_004084.1 + 23309 0.68 0.676693
Target:  5'- -gCGCGUGACCgagaGCGCguacCAGAAGCg -3'
miRNA:   3'- ugGCGCGCUGGga--CGUGaa--GUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 23567 0.69 0.643319
Target:  5'- uAUCGCGCu-CCCcGCugUcgUCGAGAGCc -3'
miRNA:   3'- -UGGCGCGcuGGGaCGugA--AGUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 26420 0.71 0.52211
Target:  5'- gUCGCGUGGCCCUGCGgaUCc-AGGUc -3'
miRNA:   3'- uGGCGCGCUGGGACGUgaAGuuUUCG- -5'
16495 3' -53.4 NC_004084.1 + 47924 0.71 0.52211
Target:  5'- uGCCGCGCGAUCCaggGCAauggc-GAGCg -3'
miRNA:   3'- -UGGCGCGCUGGGa--CGUgaaguuUUCG- -5'
16495 3' -53.4 NC_004084.1 + 12800 0.72 0.458611
Target:  5'- gACCGacagguugucagcCGgGACgUUGUACUUCGAGAGCg -3'
miRNA:   3'- -UGGC-------------GCgCUGgGACGUGAAGUUUUCG- -5'
16495 3' -53.4 NC_004084.1 + 41179 0.73 0.439679
Target:  5'- gGCCGCa-GAUCCUGCuGCUUCAccGAGCg -3'
miRNA:   3'- -UGGCGcgCUGGGACG-UGAAGUu-UUCG- -5'
16495 3' -53.4 NC_004084.1 + 32360 0.75 0.323246
Target:  5'- uCCGCGCGAUCgaGCuucuCUUCAAGcAGCu -3'
miRNA:   3'- uGGCGCGCUGGgaCGu---GAAGUUU-UCG- -5'
16495 3' -53.4 NC_004084.1 + 54471 1.11 0.001224
Target:  5'- uACCGCGCGACCCUGCACUUCAAAAGCc -3'
miRNA:   3'- -UGGCGCGCUGGGACGUGAAGUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.