miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16495 5' -54.5 NC_004084.1 + 44622 0.67 0.719402
Target:  5'- uCGCCUcggUCG-CGAC--CAACCGGaCGCg -3'
miRNA:   3'- uGCGGA---AGCuGCUGauGUUGGCC-GUG- -5'
16495 5' -54.5 NC_004084.1 + 43724 0.67 0.719402
Target:  5'- gACGCCaUCGAUGGC---GACCGGUu- -3'
miRNA:   3'- -UGCGGaAGCUGCUGaugUUGGCCGug -5'
16495 5' -54.5 NC_004084.1 + 31401 0.67 0.708673
Target:  5'- uACGCCgauaUCGGCGAagucgcagACGACgCGGcCGCg -3'
miRNA:   3'- -UGCGGa---AGCUGCUga------UGUUG-GCC-GUG- -5'
16495 5' -54.5 NC_004084.1 + 48977 0.67 0.708673
Target:  5'- uCGUCUUCGuCGACgucGCGGCCcaucGCGCg -3'
miRNA:   3'- uGCGGAAGCuGCUGa--UGUUGGc---CGUG- -5'
16495 5' -54.5 NC_004084.1 + 47750 0.67 0.708673
Target:  5'- uCGCUgccCGGCGAUcGCAAaCGGCACu -3'
miRNA:   3'- uGCGGaa-GCUGCUGaUGUUgGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 38897 0.67 0.697869
Target:  5'- aGCGUCUUCGA--GCUcgAACCGGCGu -3'
miRNA:   3'- -UGCGGAAGCUgcUGAugUUGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 45306 0.67 0.697869
Target:  5'- cCGCaacuccaGGuCGACUACGcCCGGCACg -3'
miRNA:   3'- uGCGgaag---CU-GCUGAUGUuGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 25536 0.67 0.691355
Target:  5'- uGCGUCUUCGugGGCaugucucucuuuggACAuacaccacGCCGGuCACa -3'
miRNA:   3'- -UGCGGAAGCugCUGa-------------UGU--------UGGCC-GUG- -5'
16495 5' -54.5 NC_004084.1 + 44247 0.67 0.687001
Target:  5'- uCGUCUaCGACGGg-ACGACCGGCc- -3'
miRNA:   3'- uGCGGAaGCUGCUgaUGUUGGCCGug -5'
16495 5' -54.5 NC_004084.1 + 57871 0.68 0.676079
Target:  5'- cCGCCUugUCGcaguCGACUcgAACCGGCGg -3'
miRNA:   3'- uGCGGA--AGCu---GCUGAugUUGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 54098 0.68 0.676079
Target:  5'- aACGCUccggacUCGACGACgcccGCGaucACCGGCGg -3'
miRNA:   3'- -UGCGGa-----AGCUGCUGa---UGU---UGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 43880 0.68 0.665117
Target:  5'- aGCGUCUUCGAuCGAuCUG--GCCGGgACu -3'
miRNA:   3'- -UGCGGAAGCU-GCU-GAUguUGGCCgUG- -5'
16495 5' -54.5 NC_004084.1 + 8000 0.68 0.654122
Target:  5'- aACGaaUcCGACGugU-CGACCGGUACg -3'
miRNA:   3'- -UGCggAaGCUGCugAuGUUGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 47269 0.68 0.654122
Target:  5'- gGCGCCUacuacgaggUCGACGACguccaGCGGCUcuGGgACa -3'
miRNA:   3'- -UGCGGA---------AGCUGCUGa----UGUUGG--CCgUG- -5'
16495 5' -54.5 NC_004084.1 + 38576 0.68 0.654122
Target:  5'- -aGCUggUCGACGACUACuccAGCUGGgUACu -3'
miRNA:   3'- ugCGGa-AGCUGCUGAUG---UUGGCC-GUG- -5'
16495 5' -54.5 NC_004084.1 + 28457 0.68 0.654122
Target:  5'- cACGCg--CGACGAggacaucacCUGgGACUGGCACg -3'
miRNA:   3'- -UGCGgaaGCUGCU---------GAUgUUGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 6681 0.68 0.653022
Target:  5'- gGCGCUgcUCGACGACgucCAucucgaggucaacGCCGGCGa -3'
miRNA:   3'- -UGCGGa-AGCUGCUGau-GU-------------UGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 3839 0.68 0.632084
Target:  5'- gACGCCgaCGACGGCU-CcACCGGaACc -3'
miRNA:   3'- -UGCGGaaGCUGCUGAuGuUGGCCgUG- -5'
16495 5' -54.5 NC_004084.1 + 11659 0.68 0.62106
Target:  5'- gACGUCggucggCGACGACUACGGCgaGGacaGCg -3'
miRNA:   3'- -UGCGGaa----GCUGCUGAUGUUGg-CCg--UG- -5'
16495 5' -54.5 NC_004084.1 + 47107 0.68 0.62106
Target:  5'- cCGCCggUCGGCacCUGCAuCCGGUGCg -3'
miRNA:   3'- uGCGGa-AGCUGcuGAUGUuGGCCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.