miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16496 5' -56.5 NC_004084.1 + 4444 0.69 0.464602
Target:  5'- cAGggCCUCGACGC---GCCCGACUg- -3'
miRNA:   3'- -UCaaGGAGCUGCGguuCGGGUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 12901 0.69 0.48454
Target:  5'- cGGcgUCCUCggaGugGCCGaccGGCCCGGCCa- -3'
miRNA:   3'- -UCa-AGGAG---CugCGGU---UCGGGUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 18617 0.69 0.515185
Target:  5'- cGGUgggCUCGAaguCGCCGAGUuggCCGACCUCg -3'
miRNA:   3'- -UCAag-GAGCU---GCGGUUCG---GGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 26395 0.7 0.426065
Target:  5'- gAGgUCCUCGAacCCGAGCCCuuccgucgcguGGCCCUg -3'
miRNA:   3'- -UCaAGGAGCUgcGGUUCGGG-----------UUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 46674 0.7 0.454795
Target:  5'- cAGUcgCCUCGaggaccaugacGCGCCAcuGCUCAGCgCCCa -3'
miRNA:   3'- -UCAa-GGAGC-----------UGCGGUu-CGGGUUG-GGG- -5'
16496 5' -56.5 NC_004084.1 + 30468 0.7 0.4451
Target:  5'- cGUUCCUCuacgaGGCGCU--GCCgGACUCCg -3'
miRNA:   3'- uCAAGGAG-----CUGCGGuuCGGgUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 49931 0.71 0.380677
Target:  5'- cGGUgaacaucgCCUUGuCGUCcGGCCaCAGCCCCg -3'
miRNA:   3'- -UCAa-------GGAGCuGCGGuUCGG-GUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 56134 0.71 0.389494
Target:  5'- cAGUgUCgUCGGCGUCGA--CCAGCCCCa -3'
miRNA:   3'- -UCA-AGgAGCUGCGGUUcgGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 12878 0.71 0.398443
Target:  5'- gAGgUCCUCG-CGCCAA-CCCA-UCCCg -3'
miRNA:   3'- -UCaAGGAGCuGCGGUUcGGGUuGGGG- -5'
16496 5' -56.5 NC_004084.1 + 51064 0.71 0.380677
Target:  5'- uGUUCCUCGuagau-GGCCUGACCCCa -3'
miRNA:   3'- uCAAGGAGCugcgguUCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 32259 0.71 0.371995
Target:  5'- cGUUCUcgUCGACuGCCc-GCCCAACCUg -3'
miRNA:   3'- uCAAGG--AGCUG-CGGuuCGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 4912 0.71 0.398443
Target:  5'- gAGUUCCUCGAgcacuaCGUCGaggGGCuCCAGCCgCu -3'
miRNA:   3'- -UCAAGGAGCU------GCGGU---UCG-GGUUGGgG- -5'
16496 5' -56.5 NC_004084.1 + 54402 0.72 0.338636
Target:  5'- cGUUCCagUCGACGCCucauGUCUAccgauucccACCCCg -3'
miRNA:   3'- uCAAGG--AGCUGCGGuu--CGGGU---------UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 7492 0.72 0.338636
Target:  5'- aGGgUCgUCGACGUCGAGgCCGAUCCg -3'
miRNA:   3'- -UCaAGgAGCUGCGGUUCgGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 8613 0.73 0.307504
Target:  5'- gAGgcugUCCUCGAgGCCGaucuGGCCguCGACUCCg -3'
miRNA:   3'- -UCa---AGGAGCUgCGGU----UCGG--GUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 50213 0.74 0.24558
Target:  5'- uGGUUcaaCCUCGACGCCA--UCCGcgaACCCCa -3'
miRNA:   3'- -UCAA---GGAGCUGCGGUucGGGU---UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 19973 0.74 0.239377
Target:  5'- --aUCCUCGAgGCCGcagGGgCCGACCCa -3'
miRNA:   3'- ucaAGGAGCUgCGGU---UCgGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 48925 0.76 0.18433
Target:  5'- -cUUCCggUCGGCGCCGGGCUuCAGCUCCa -3'
miRNA:   3'- ucAAGG--AGCUGCGGUUCGG-GUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 49064 0.78 0.140768
Target:  5'- cAGUUCCacaUCGGCGCgAAGCCCGGCgggaucaagcaCCCg -3'
miRNA:   3'- -UCAAGG---AGCUGCGgUUCGGGUUG-----------GGG- -5'
16496 5' -56.5 NC_004084.1 + 54753 1.11 0.00063
Target:  5'- gAGUUCCUCGACGCCAAGCCCAACCCCc -3'
miRNA:   3'- -UCAAGGAGCUGCGGUUCGGGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.