miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16496 5' -56.5 NC_004084.1 + 37287 0.66 0.697346
Target:  5'- cAGgacgUCCUCuggGAgGCCAcGUUCGACCUCa -3'
miRNA:   3'- -UCa---AGGAG---CUgCGGUuCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 22638 0.68 0.567855
Target:  5'- -cUUCC-CGGCGCCuccGGCUCgAACCUCu -3'
miRNA:   3'- ucAAGGaGCUGCGGu--UCGGG-UUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 42643 0.67 0.600121
Target:  5'- gAGUUCCagUCGGCGgCGcAGUCCGACgacguccuCCCg -3'
miRNA:   3'- -UCAAGG--AGCUGCgGU-UCGGGUUG--------GGG- -5'
16496 5' -56.5 NC_004084.1 + 57378 0.67 0.61094
Target:  5'- ---aCCUCGGCGaacuCGAGCgCGcCCCCg -3'
miRNA:   3'- ucaaGGAGCUGCg---GUUCGgGUuGGGG- -5'
16496 5' -56.5 NC_004084.1 + 52701 0.66 0.642385
Target:  5'- gAGgaCCUCGGC-CCGAGCgacguccucgaacUCAACCCa -3'
miRNA:   3'- -UCaaGGAGCUGcGGUUCG-------------GGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 47658 0.66 0.643469
Target:  5'- gAGgUCggCGACGCCcccacuggcGAGCCgGAUCCCc -3'
miRNA:   3'- -UCaAGgaGCUGCGG---------UUCGGgUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 39402 0.66 0.654304
Target:  5'- --aUCCcCGAcaCGCCGGGaUCCcACCCCg -3'
miRNA:   3'- ucaAGGaGCU--GCGGUUC-GGGuUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 56684 0.66 0.675906
Target:  5'- gAGUUCgUCaucuACGCCAcGCUCGACUCg -3'
miRNA:   3'- -UCAAGgAGc---UGCGGUuCGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 46195 0.66 0.697346
Target:  5'- --cUCCUCGACgagcugGCCGAGUacuAUCCCg -3'
miRNA:   3'- ucaAGGAGCUG------CGGUUCGgguUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 22840 0.68 0.536045
Target:  5'- cGUUCgUCGACgGCCucgugauGCUCGacgaACCCCg -3'
miRNA:   3'- uCAAGgAGCUG-CGGuu-----CGGGU----UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 3828 0.69 0.50899
Target:  5'- cAGUcuUCgUCGACGCCGacgacggcuccaccgGaaccucgguGUCCAACCCCg -3'
miRNA:   3'- -UCA--AGgAGCUGCGGU---------------U---------CGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 39636 0.69 0.48454
Target:  5'- gAGUcgaUCguacgCGACGCCGAGgaacucgcgcgcUCCAACCCCg -3'
miRNA:   3'- -UCA---AGga---GCUGCGGUUC------------GGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 49064 0.78 0.140768
Target:  5'- cAGUUCCacaUCGGCGCgAAGCCCGGCgggaucaagcaCCCg -3'
miRNA:   3'- -UCAAGG---AGCUGCGgUUCGGGUUG-----------GGG- -5'
16496 5' -56.5 NC_004084.1 + 19973 0.74 0.239377
Target:  5'- --aUCCUCGAgGCCGcagGGgCCGACCCa -3'
miRNA:   3'- ucaAGGAGCUgCGGU---UCgGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 50213 0.74 0.24558
Target:  5'- uGGUUcaaCCUCGACGCCA--UCCGcgaACCCCa -3'
miRNA:   3'- -UCAA---GGAGCUGCGGUucGGGU---UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 54402 0.72 0.338636
Target:  5'- cGUUCCagUCGACGCCucauGUCUAccgauucccACCCCg -3'
miRNA:   3'- uCAAGG--AGCUGCGGuu--CGGGU---------UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 32259 0.71 0.371995
Target:  5'- cGUUCUcgUCGACuGCCc-GCCCAACCUg -3'
miRNA:   3'- uCAAGG--AGCUG-CGGuuCGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 4912 0.71 0.398443
Target:  5'- gAGUUCCUCGAgcacuaCGUCGaggGGCuCCAGCCgCu -3'
miRNA:   3'- -UCAAGGAGCU------GCGGU---UCG-GGUUGGgG- -5'
16496 5' -56.5 NC_004084.1 + 30468 0.7 0.4451
Target:  5'- cGUUCCUCuacgaGGCGCU--GCCgGACUCCg -3'
miRNA:   3'- uCAAGGAG-----CUGCGGuuCGGgUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 4444 0.69 0.464602
Target:  5'- cAGggCCUCGACGC---GCCCGACUg- -3'
miRNA:   3'- -UCaaGGAGCUGCGguuCGGGUUGGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.