Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16496 | 5' | -56.5 | NC_004084.1 | + | 51574 | 0.66 | 0.697346 |
Target: 5'- cGGUUCg-UGGCGUUGAGCguCCGGCCCUc -3' miRNA: 3'- -UCAAGgaGCUGCGGUUCG--GGUUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 41716 | 0.67 | 0.577497 |
Target: 5'- gAGUUCCUgGACGaucgcgaCCAAcGUCgaGGCCCCg -3' miRNA: 3'- -UCAAGGAgCUGC-------GGUU-CGGg-UUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 18657 | 0.68 | 0.557191 |
Target: 5'- --gUCUUCGGCGUCGGGaUCAGCCUCc -3' miRNA: 3'- ucaAGGAGCUGCGGUUCgGGUUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 48925 | 0.76 | 0.18433 |
Target: 5'- -cUUCCggUCGGCGCCGGGCUuCAGCUCCa -3' miRNA: 3'- ucAAGG--AGCUGCGGUUCGG-GUUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 6157 | 0.66 | 0.686651 |
Target: 5'- gGGUUCCU-GGCGaUCGGGCuCCAgguggACCUCg -3' miRNA: 3'- -UCAAGGAgCUGC-GGUUCG-GGU-----UGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 7196 | 0.66 | 0.66512 |
Target: 5'- gAGcUgCUCGACGCaccacGCCCAguaGCCCg -3' miRNA: 3'- -UCaAgGAGCUGCGguu--CGGGU---UGGGg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 41954 | 0.66 | 0.654304 |
Target: 5'- cAGggCCgCGacuGCGCuCGcGCCCAugCCCg -3' miRNA: 3'- -UCaaGGaGC---UGCG-GUuCGGGUugGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 20032 | 0.66 | 0.654304 |
Target: 5'- cGGUuggUCCUCGGuCGCCuucccgcGCUCGAUCCg -3' miRNA: 3'- -UCA---AGGAGCU-GCGGuu-----CGGGUUGGGg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 11852 | 0.67 | 0.632623 |
Target: 5'- ---gCCgcgaugcCGAUGCCGAGUCCGACCa- -3' miRNA: 3'- ucaaGGa------GCUGCGGUUCGGGUUGGgg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 54077 | 0.67 | 0.586097 |
Target: 5'- uGUUCCUCGGCGUCGguggagaacgcuccGGaCUCGACgacgCCCg -3' miRNA: 3'- uCAAGGAGCUGCGGU--------------UC-GGGUUG----GGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 28608 | 0.67 | 0.600121 |
Target: 5'- cGUUCCUCG-CGCCGuacuucuGCCaCGACUg- -3' miRNA: 3'- uCAAGGAGCuGCGGUu------CGG-GUUGGgg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 57646 | 0.67 | 0.632623 |
Target: 5'- cGUcgCCUCGACgaGCCGaucggccugguGGUCCAGCgCCu -3' miRNA: 3'- uCAa-GGAGCUG--CGGU-----------UCGGGUUGgGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 48029 | 0.66 | 0.697346 |
Target: 5'- gAGUUCUUCGcgcucgauCGCCu-GCUCGACUCUc -3' miRNA: 3'- -UCAAGGAGCu-------GCGGuuCGGGUUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 17481 | 0.67 | 0.600121 |
Target: 5'- cGUUCg-CGACGUCc-GUCCAGCCCg -3' miRNA: 3'- uCAAGgaGCUGCGGuuCGGGUUGGGg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 21170 | 0.66 | 0.697346 |
Target: 5'- --gUCCUCGacgaGCGCCGGGaCgCGguucuucucGCCCCg -3' miRNA: 3'- ucaAGGAGC----UGCGGUUC-GgGU---------UGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 23175 | 0.66 | 0.654304 |
Target: 5'- uGGUcgUCCcagagguggUCGACGUCGaucgcgaucgucGGCUCGAUCCCg -3' miRNA: 3'- -UCA--AGG---------AGCUGCGGU------------UCGGGUUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 9647 | 0.67 | 0.589328 |
Target: 5'- cGUccUCCUCG-CGCUucccgauauGGCUgAACCCCu -3' miRNA: 3'- uCA--AGGAGCuGCGGu--------UCGGgUUGGGG- -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 36498 | 0.68 | 0.567855 |
Target: 5'- -uUUCCUCGACGUCGaacucgaugaggAGgCCGACCg- -3' miRNA: 3'- ucAAGGAGCUGCGGU------------UCgGGUUGGgg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 6371 | 0.66 | 0.686651 |
Target: 5'- uAGUccaUCC-CGACGCCGuagaccgcucGCUCAGCCUg -3' miRNA: 3'- -UCA---AGGaGCUGCGGUu---------CGGGUUGGGg -5' |
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16496 | 5' | -56.5 | NC_004084.1 | + | 12515 | 0.66 | 0.664039 |
Target: 5'- --cUCCUCGgagaaguACGCUAAGCaggacucgaCCGGCCCg -3' miRNA: 3'- ucaAGGAGC-------UGCGGUUCG---------GGUUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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