miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16496 5' -56.5 NC_004084.1 + 12878 0.71 0.398443
Target:  5'- gAGgUCCUCG-CGCCAA-CCCA-UCCCg -3'
miRNA:   3'- -UCaAGGAGCuGCGGUUcGGGUuGGGG- -5'
16496 5' -56.5 NC_004084.1 + 26395 0.7 0.426065
Target:  5'- gAGgUCCUCGAacCCGAGCCCuuccgucgcguGGCCCUg -3'
miRNA:   3'- -UCaAGGAGCUgcGGUUCGGG-----------UUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 14752 0.68 0.557191
Target:  5'- cAGgcaCUCGGCGCggUAGGCCC-GCCCg -3'
miRNA:   3'- -UCaagGAGCUGCG--GUUCGGGuUGGGg -5'
16496 5' -56.5 NC_004084.1 + 51064 0.71 0.380677
Target:  5'- uGUUCCUCGuagau-GGCCUGACCCCa -3'
miRNA:   3'- uCAAGGAGCugcgguUCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 56429 0.68 0.536045
Target:  5'- --gUCCUCGACGaCguAGCUCugcAUCCCg -3'
miRNA:   3'- ucaAGGAGCUGC-GguUCGGGu--UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 18777 0.69 0.464602
Target:  5'- gAGUUCCUCGGCGUCGcGUacgaUCGACUCg -3'
miRNA:   3'- -UCAAGGAGCUGCGGUuCG----GGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 7492 0.72 0.338636
Target:  5'- aGGgUCgUCGACGUCGAGgCCGAUCCg -3'
miRNA:   3'- -UCaAGgAGCUGCGGUUCgGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 18617 0.69 0.515185
Target:  5'- cGGUgggCUCGAaguCGCCGAGUuggCCGACCUCg -3'
miRNA:   3'- -UCAag-GAGCU---GCGGUUCG---GGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 12901 0.69 0.48454
Target:  5'- cGGcgUCCUCggaGugGCCGaccGGCCCGGCCa- -3'
miRNA:   3'- -UCa-AGGAG---CugCGGU---UCGGGUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 46674 0.7 0.454795
Target:  5'- cAGUcgCCUCGaggaccaugacGCGCCAcuGCUCAGCgCCCa -3'
miRNA:   3'- -UCAa-GGAGC-----------UGCGGUu-CGGGUUG-GGG- -5'
16496 5' -56.5 NC_004084.1 + 56134 0.71 0.389494
Target:  5'- cAGUgUCgUCGGCGUCGA--CCAGCCCCa -3'
miRNA:   3'- -UCA-AGgAGCUGCGGUUcgGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 8613 0.73 0.307504
Target:  5'- gAGgcugUCCUCGAgGCCGaucuGGCCguCGACUCCg -3'
miRNA:   3'- -UCa---AGGAGCUgCGGU----UCGG--GUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 49355 0.69 0.464602
Target:  5'- aGGUgaUCgUCGACGUC--GCCCGACUCUa -3'
miRNA:   3'- -UCA--AGgAGCUGCGGuuCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 5142 0.69 0.48454
Target:  5'- uGGUcgCCagGACGUCGcccGGCCCGAUCUCg -3'
miRNA:   3'- -UCAa-GGagCUGCGGU---UCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 30939 0.69 0.501804
Target:  5'- --cUCgUCGACGUCGAGCUCGAggacgccgaccgucUCCCg -3'
miRNA:   3'- ucaAGgAGCUGCGGUUCGGGUU--------------GGGG- -5'
16496 5' -56.5 NC_004084.1 + 17663 0.69 0.504879
Target:  5'- ---gCUUCGACuGCCGAGUCCGgugcuuGCCCUu -3'
miRNA:   3'- ucaaGGAGCUG-CGGUUCGGGU------UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 48925 0.76 0.18433
Target:  5'- -cUUCCggUCGGCGCCGGGCUuCAGCUCCa -3'
miRNA:   3'- ucAAGG--AGCUGCGGUUCGG-GUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 18657 0.68 0.557191
Target:  5'- --gUCUUCGGCGUCGGGaUCAGCCUCc -3'
miRNA:   3'- ucaAGGAGCUGCGGUUCgGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 57378 0.67 0.61094
Target:  5'- ---aCCUCGGCGaacuCGAGCgCGcCCCCg -3'
miRNA:   3'- ucaaGGAGCUGCg---GUUCGgGUuGGGG- -5'
16496 5' -56.5 NC_004084.1 + 4912 0.71 0.398443
Target:  5'- gAGUUCCUCGAgcacuaCGUCGaggGGCuCCAGCCgCu -3'
miRNA:   3'- -UCAAGGAGCU------GCGGU---UCG-GGUUGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.