miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16496 5' -56.5 NC_004084.1 + 56511 0.67 0.61094
Target:  5'- uGggUCUUGAUGUCGgucGGCCCcauCCCCg -3'
miRNA:   3'- uCaaGGAGCUGCGGU---UCGGGuu-GGGG- -5'
16496 5' -56.5 NC_004084.1 + 17481 0.67 0.600121
Target:  5'- cGUUCg-CGACGUCc-GUCCAGCCCg -3'
miRNA:   3'- uCAAGgaGCUGCGGuuCGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 28608 0.67 0.600121
Target:  5'- cGUUCCUCG-CGCCGuacuucuGCCaCGACUg- -3'
miRNA:   3'- uCAAGGAGCuGCGGUu------CGG-GUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 42643 0.67 0.600121
Target:  5'- gAGUUCCagUCGGCGgCGcAGUCCGACgacguccuCCCg -3'
miRNA:   3'- -UCAAGG--AGCUGCgGU-UCGGGUUG--------GGG- -5'
16496 5' -56.5 NC_004084.1 + 9647 0.67 0.589328
Target:  5'- cGUccUCCUCG-CGCUucccgauauGGCUgAACCCCu -3'
miRNA:   3'- uCA--AGGAGCuGCGGu--------UCGGgUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 54077 0.67 0.586097
Target:  5'- uGUUCCUCGGCGUCGguggagaacgcuccGGaCUCGACgacgCCCg -3'
miRNA:   3'- uCAAGGAGCUGCGGU--------------UC-GGGUUG----GGG- -5'
16496 5' -56.5 NC_004084.1 + 41716 0.67 0.577497
Target:  5'- gAGUUCCUgGACGaucgcgaCCAAcGUCgaGGCCCCg -3'
miRNA:   3'- -UCAAGGAgCUGC-------GGUU-CGGg-UUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 36498 0.68 0.567855
Target:  5'- -uUUCCUCGACGUCGaacucgaugaggAGgCCGACCg- -3'
miRNA:   3'- ucAAGGAGCUGCGGU------------UCgGGUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 22638 0.68 0.567855
Target:  5'- -cUUCC-CGGCGCCuccGGCUCgAACCUCu -3'
miRNA:   3'- ucAAGGaGCUGCGGu--UCGGG-UUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 14752 0.68 0.557191
Target:  5'- cAGgcaCUCGGCGCggUAGGCCC-GCCCg -3'
miRNA:   3'- -UCaagGAGCUGCG--GUUCGGGuUGGGg -5'
16496 5' -56.5 NC_004084.1 + 18657 0.68 0.557191
Target:  5'- --gUCUUCGGCGUCGGGaUCAGCCUCc -3'
miRNA:   3'- ucaAGGAGCUGCGGUUCgGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 22840 0.68 0.536045
Target:  5'- cGUUCgUCGACgGCCucgugauGCUCGacgaACCCCg -3'
miRNA:   3'- uCAAGgAGCUG-CGGuu-----CGGGU----UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 56429 0.68 0.536045
Target:  5'- --gUCCUCGACGaCguAGCUCugcAUCCCg -3'
miRNA:   3'- ucaAGGAGCUGC-GguUCGGGu--UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 18617 0.69 0.515185
Target:  5'- cGGUgggCUCGAaguCGCCGAGUuggCCGACCUCg -3'
miRNA:   3'- -UCAag-GAGCU---GCGGUUCG---GGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 3828 0.69 0.50899
Target:  5'- cAGUcuUCgUCGACGCCGacgacggcuccaccgGaaccucgguGUCCAACCCCg -3'
miRNA:   3'- -UCA--AGgAGCUGCGGU---------------U---------CGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 17663 0.69 0.504879
Target:  5'- ---gCUUCGACuGCCGAGUCCGgugcuuGCCCUu -3'
miRNA:   3'- ucaaGGAGCUG-CGGUUCGGGU------UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 30939 0.69 0.501804
Target:  5'- --cUCgUCGACGUCGAGCUCGAggacgccgaccgucUCCCg -3'
miRNA:   3'- ucaAGgAGCUGCGGUUCGGGUU--------------GGGG- -5'
16496 5' -56.5 NC_004084.1 + 39636 0.69 0.48454
Target:  5'- gAGUcgaUCguacgCGACGCCGAGgaacucgcgcgcUCCAACCCCg -3'
miRNA:   3'- -UCA---AGga---GCUGCGGUUC------------GGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 12901 0.69 0.48454
Target:  5'- cGGcgUCCUCggaGugGCCGaccGGCCCGGCCa- -3'
miRNA:   3'- -UCa-AGGAG---CugCGGU---UCGGGUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 5142 0.69 0.48454
Target:  5'- uGGUcgCCagGACGUCGcccGGCCCGAUCUCg -3'
miRNA:   3'- -UCAa-GGagCUGCGGU---UCGGGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.